{"id":"https://openalex.org/W4391166916","doi":"https://doi.org/10.1038/s42256-023-00781-8","title":"Improving generalization of machine learning-identified biomarkers using causal modelling with examples from immune receptor diagnostics","display_name":"Improving generalization of machine learning-identified biomarkers using causal modelling with examples from immune receptor diagnostics","publication_year":2024,"publication_date":"2024-01-24","ids":{"openalex":"https://openalex.org/W4391166916","doi":"https://doi.org/10.1038/s42256-023-00781-8"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-023-00781-8","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-023-00781-8","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037853098","display_name":"Milena Pavlovi\u0107","orcid":"https://orcid.org/0000-0002-2484-3868"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Milena Pavlovi\u0107","raw_affiliation_strings":["Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway","K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","UiO:RealArt Convergence Environment, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"UiO:RealArt Convergence Environment, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069724737","display_name":"Ghadi S. Al Hajj","orcid":"https://orcid.org/0000-0003-1639-1424"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ghadi S. Al Hajj","raw_affiliation_strings":["Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000683046","display_name":"Chakravarthi Kanduri","orcid":"https://orcid.org/0000-0002-4783-9060"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Chakravarthi Kanduri","raw_affiliation_strings":["Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway","UiO:RealArt Convergence Environment, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"UiO:RealArt Convergence Environment, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046161876","display_name":"Johan Pensar","orcid":"https://orcid.org/0000-0002-5158-5761"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Johan Pensar","raw_affiliation_strings":["Department of Mathematics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039901579","display_name":"Mollie E. Wood","orcid":"https://orcid.org/0000-0002-9302-2641"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO","US"],"is_corresponding":false,"raw_author_name":"Mollie E. Wood","raw_affiliation_strings":["Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","Department of Pharmacy, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Pharmacy, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081876747","display_name":"Ludvig M. Sollid","orcid":"https://orcid.org/0000-0001-8860-704X"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ludvig M. Sollid","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]},{"raw_affiliation_string":"K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089158926","display_name":"Victor Greiff","orcid":"https://orcid.org/0000-0003-2622-5032"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Victor Greiff","raw_affiliation_strings":["Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054500587","display_name":"Geir Kjetil Sandve","orcid":"https://orcid.org/0000-0002-4959-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Geir K. Sandve","raw_affiliation_strings":["Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway","K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","UiO:RealArt Convergence Environment, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"UiO:RealArt Convergence Environment, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5037853098"],"corresponding_institution_ids":["https://openalex.org/I184942183"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":3.5089,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.93042461,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"6","issue":"1","first_page":"15","last_page":"24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10845","display_name":"Advanced Causal Inference Techniques","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.7269525527954102},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5563986301422119},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46391430497169495},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45455750823020935},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4402086138725281},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3934894800186157},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.38853490352630615},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.38285031914711},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2490403950214386},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1159810721874237}],"concepts":[{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.7269525527954102},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5563986301422119},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46391430497169495},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45455750823020935},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4402086138725281},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3934894800186157},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.38853490352630615},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.38285031914711},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2490403950214386},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1159810721874237},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-023-00781-8","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-023-00781-8","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":92,"referenced_works":["https://openalex.org/W1483854882","https://openalex.org/W1883768105","https://openalex.org/W1973639800","https://openalex.org/W1974596630","https://openalex.org/W1978209044","https://openalex.org/W1979068809","https://openalex.org/W1980541833","https://openalex.org/W1994094188","https://openalex.org/W2022824615","https://openalex.org/W2027663660","https://openalex.org/W2031011895","https://openalex.org/W2046247026","https://openalex.org/W2089543767","https://openalex.org/W2091477384","https://openalex.org/W2096192437","https://openalex.org/W2104094955","https://openalex.org/W2120708938","https://openalex.org/W2134103864","https://openalex.org/W2137890831","https://openalex.org/W2140323624","https://openalex.org/W2143891888","https://openalex.org/W2171634310","https://openalex.org/W2308074142","https://openalex.org/W2466989778","https://openalex.org/W2494982315","https://openalex.org/W2518536270","https://openalex.org/W2605177850","https://openalex.org/W2610643013","https://openalex.org/W2618817116","https://openalex.org/W2768618120","https://openalex.org/W2781887390","https://openalex.org/W2789135444","https://openalex.org/W2790376986","https://openalex.org/W2790482716","https://openalex.org/W2792573580","https://openalex.org/W2798958557","https://openalex.org/W2891620446","https://openalex.org/W2893410333","https://openalex.org/W2926687552","https://openalex.org/W2935785910","https://openalex.org/W2951959160","https://openalex.org/W2979509742","https://openalex.org/W2982580298","https://openalex.org/W2984827653","https://openalex.org/W2995750307","https://openalex.org/W3023021572","https://openalex.org/W3041564249","https://openalex.org/W3044971416","https://openalex.org/W3048817558","https://openalex.org/W3083146163","https://openalex.org/W3083225904","https://openalex.org/W3095930322","https://openalex.org/W3097981474","https://openalex.org/W3101138461","https://openalex.org/W3102740321","https://openalex.org/W3106503709","https://openalex.org/W3123856905","https://openalex.org/W3132794239","https://openalex.org/W3133542152","https://openalex.org/W3135588948","https://openalex.org/W3139321392","https://openalex.org/W3160993535","https://openalex.org/W3161658709","https://openalex.org/W3165355346","https://openalex.org/W3178048276","https://openalex.org/W3183267169","https://openalex.org/W3184997006","https://openalex.org/W3186118520","https://openalex.org/W3196850540","https://openalex.org/W3199482481","https://openalex.org/W3205116986","https://openalex.org/W3214040448","https://openalex.org/W3217170401","https://openalex.org/W3217314753","https://openalex.org/W4213447687","https://openalex.org/W4220721882","https://openalex.org/W4223430324","https://openalex.org/W4225086377","https://openalex.org/W4283772362","https://openalex.org/W4288287305","https://openalex.org/W4289261842","https://openalex.org/W4292811746","https://openalex.org/W4295242625","https://openalex.org/W4296691020","https://openalex.org/W4317831259","https://openalex.org/W4323320132","https://openalex.org/W4363671793","https://openalex.org/W4367365518","https://openalex.org/W4384575937","https://openalex.org/W4384663928","https://openalex.org/W4388461214","https://openalex.org/W6803272178"],"related_works":["https://openalex.org/W2371138613","https://openalex.org/W2048963458","https://openalex.org/W43109613","https://openalex.org/W2359952343","https://openalex.org/W2080152487","https://openalex.org/W2239445980","https://openalex.org/W2995553446","https://openalex.org/W2120455979","https://openalex.org/W4200527723","https://openalex.org/W3022347918"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":7}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
