{"id":"https://openalex.org/W4388721931","doi":"https://doi.org/10.1038/s42256-023-00757-8","title":"Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers","display_name":"Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers","publication_year":2023,"publication_date":"2023-11-16","ids":{"openalex":"https://openalex.org/W4388721931","doi":"https://doi.org/10.1038/s42256-023-00757-8"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-023-00757-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00757-8","pdf_url":"https://www.nature.com/articles/s42256-023-00757-8.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.nature.com/articles/s42256-023-00757-8.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035017747","display_name":"Sameer Khan","orcid":"https://orcid.org/0000-0002-3345-5904"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Sumeer Ahmad Khan","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","SDAIA-KAUST Center of Excellence in Data Science and Artificial Intelligence, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"SDAIA-KAUST Center of Excellence in Data Science and Artificial Intelligence, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054754981","display_name":"Alberto Maillo","orcid":"https://orcid.org/0000-0002-3835-9794"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Alberto Maillo","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016518691","display_name":"Vincenzo Lagani","orcid":"https://orcid.org/0000-0002-6552-6076"},"institutions":[{"id":"https://openalex.org/I183003952","display_name":"Ilia State University","ror":"https://ror.org/051qn8h41","country_code":"GE","type":"education","lineage":["https://openalex.org/I183003952"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["GE","SA"],"is_corresponding":false,"raw_author_name":"Vincenzo Lagani","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","Institute of Chemical Biology, Ilia State University, Tbilisi, Georgia","SDAIA-KAUST Center of Excellence in Data Science and Artificial Intelligence, Thuwal, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0002-6552-6076","affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Institute of Chemical Biology, Ilia State University, Tbilisi, Georgia","institution_ids":["https://openalex.org/I183003952"]},{"raw_affiliation_string":"SDAIA-KAUST Center of Excellence in Data Science and Artificial Intelligence, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027667039","display_name":"Robert Lehmann","orcid":"https://orcid.org/0000-0001-7071-4226"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Robert Lehmann","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0001-7071-4226","affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055536778","display_name":"Narsis A. Kiani","orcid":"https://orcid.org/0000-0002-0949-046X"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Narsis A. Kiani","raw_affiliation_strings":["Algorithmic Dynamic Lab, Department of Oncology and Pathology, Karolinska Institute, Stockholm, Sweden","Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-0949-046X","affiliations":[{"raw_affiliation_string":"Algorithmic Dynamic Lab, Department of Oncology and Pathology, Karolinska Institute, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078466508","display_name":"David G\u00f3mez-Cabrero","orcid":"https://orcid.org/0000-0003-4186-3788"},"institutions":[{"id":"https://openalex.org/I175051016","display_name":"Universidad P\u00fablica de Navarra (UPNA)","ror":"https://ror.org/02z0cah89","country_code":"ES","type":"education","lineage":["https://openalex.org/I175051016"]},{"id":"https://openalex.org/I4210117069","display_name":"Navarrabiomed","ror":"https://ror.org/03atdda90","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210117069"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["ES","SA"],"is_corresponding":false,"raw_author_name":"David Gomez-Cabrero","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","Translational Bioinformatics Unit, Navarrabiomed, Universidad P\u00fablica de Navarra (UPNA), IdiSNA, Pamplona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Translational Bioinformatics Unit, Navarrabiomed, Universidad P\u00fablica de Navarra (UPNA), IdiSNA, Pamplona, Spain","institution_ids":["https://openalex.org/I175051016","https://openalex.org/I4210117069"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035252549","display_name":"Jesper Tegn\u00e9r","orcid":"https://orcid.org/0000-0002-9568-5588"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","SE"],"is_corresponding":true,"raw_author_name":"Jesper Tegner","raw_affiliation_strings":["Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","Science for Life Laboratory, Solna, Sweden","Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-9568-5588","affiliations":[{"raw_affiliation_string":"Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Science for Life Laboratory, Solna, Sweden","institution_ids":["https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Unit of Computational Medicine, Department of Medicine, Center for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5035252549"],"corresponding_institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I2800139495","https://openalex.org/I28166907","https://openalex.org/I71920554"],"apc_list":{"value":11690,"currency":"USD","value_usd":11690},"apc_paid":{"value":11690,"currency":"USD","value_usd":11690},"fwci":2.3406,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.89724472,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"5","issue":"12","first_page":"1437","last_page":"1446"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7178640961647034},{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.6654765605926514},{"id":"https://openalex.org/keywords/grammar","display_name":"Grammar","score":0.6254850029945374},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5677451491355896},{"id":"https://openalex.org/keywords/generalizability-theory","display_name":"Generalizability theory","score":0.5547100305557251},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5480192303657532},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.4611928462982178},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3801012337207794},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2104511260986328},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17509520053863525},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1453835368156433},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11411625146865845},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1117827296257019},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.09062579274177551}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7178640961647034},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.6654765605926514},{"id":"https://openalex.org/C26022165","wikidata":"https://www.wikidata.org/wiki/Q8091","display_name":"Grammar","level":2,"score":0.6254850029945374},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5677451491355896},{"id":"https://openalex.org/C27158222","wikidata":"https://www.wikidata.org/wiki/Q5532422","display_name":"Generalizability theory","level":2,"score":0.5547100305557251},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5480192303657532},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.4611928462982178},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3801012337207794},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2104511260986328},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17509520053863525},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1453835368156433},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11411625146865845},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1117827296257019},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.09062579274177551},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-023-00757-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00757-8","pdf_url":"https://www.nature.com/articles/s42256-023-00757-8.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1038/s42256-023-00757-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00757-8","pdf_url":"https://www.nature.com/articles/s42256-023-00757-8.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.800000011920929,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322315","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388721931.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2148143831","https://openalex.org/W2800392236","https://openalex.org/W2884561390","https://openalex.org/W2892221324","https://openalex.org/W2896518632","https://openalex.org/W2931036699","https://openalex.org/W2951506174","https://openalex.org/W2952631022","https://openalex.org/W4212836561","https://openalex.org/W4297243391","https://openalex.org/W4309693330","https://openalex.org/W6913024435"],"related_works":["https://openalex.org/W2118717649","https://openalex.org/W4282938614","https://openalex.org/W2413243053","https://openalex.org/W410723623","https://openalex.org/W2015341305","https://openalex.org/W2035068594","https://openalex.org/W4225593417","https://openalex.org/W2573498121","https://openalex.org/W3022298670","https://openalex.org/W3160494304"],"abstract_inverted_index":{"Abstract":[0],"The":[1,15,90],"rise":[2],"of":[3,22,69,83,92,102,108,128,145],"single-cell":[4,49,88,148],"genomics":[5,50],"is":[6],"an":[7,105,129],"attractive":[8],"opportunity":[9],"for":[10],"data-hungry":[11],"machine":[12],"learning":[13],"algorithms.":[14],"scBERT":[16,58],"method,":[17],"inspired":[18],"by":[19,36],"the":[20,66,74,77,81,95,100,112,126,143],"success":[21],"BERT":[23],"(\u2018bidirectional":[24],"encoder":[25],"representations":[26],"from":[27],"transformers\u2019)":[28],"in":[29,48,56,87,94,147],"natural":[30,84],"language":[31,85],"processing,":[32],"was":[33],"recently":[34],"introduced":[35],"Yang":[37],"et":[38],"al.":[39],"as":[40,135],"a":[41,121,136],"data-driven":[42],"tool":[43],"to":[44,53,64,114,124],"annotate":[45],"cell":[46],"types":[47],"data.":[51],"Analogous":[52],"contextual":[54],"embedding":[55],"BERT,":[57],"leverages":[59],"pretraining":[60],"and":[61,119,141],"self-attention":[62],"mechanisms":[63],"learn":[65],"\u2018transcriptional":[67],"grammar\u2019":[68],"cells.":[70],"Here":[71],"we":[72,110],"investigate":[73],"reusability":[75],"beyond":[76],"original":[78],"datasets,":[79],"assessing":[80],"generalizability":[82],"techniques":[86],"genomics.":[89,149],"degree":[91],"imbalance":[93],"cell-type":[96],"distribution":[97,117],"substantially":[98],"influences":[99],"performance":[101],"scBERT.":[103],"Anticipating":[104],"increased":[106],"utilization":[107],"transformers,":[109],"highlight":[111],"necessity":[113],"consider":[115],"data":[116],"carefully":[118],"introduce":[120],"subsampling":[122],"technique":[123],"mitigate":[125],"influence":[127],"imbalanced":[130],"distribution.":[131],"Our":[132],"analysis":[133],"serves":[134],"stepping":[137],"stone":[138],"towards":[139],"understanding":[140],"optimizing":[142],"use":[144],"transformers":[146]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":13},{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
