{"id":"https://openalex.org/W4388208513","doi":"https://doi.org/10.1038/s42256-023-00739-w","title":"Design of prime-editing guide RNAs with deep transfer learning","display_name":"Design of prime-editing guide RNAs with deep transfer learning","publication_year":2023,"publication_date":"2023-10-26","ids":{"openalex":"https://openalex.org/W4388208513","doi":"https://doi.org/10.1038/s42256-023-00739-w"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-023-00739-w","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00739-w","pdf_url":"https://www.nature.com/articles/s42256-023-00739-w.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.nature.com/articles/s42256-023-00739-w.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100415226","display_name":"Feng Liu","orcid":"https://orcid.org/0000-0001-9410-676X"},"institutions":[{"id":"https://openalex.org/I87780372","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58","country_code":"CN","type":"education","lineage":["https://openalex.org/I87780372"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Liu","raw_affiliation_strings":["College of Medical Informatics, Chongqing Medical University, Chongqing, China"],"raw_orcid":"https://orcid.org/0000-0001-9410-676X","affiliations":[{"raw_affiliation_string":"College of Medical Informatics, Chongqing Medical University, Chongqing, China","institution_ids":["https://openalex.org/I87780372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029652304","display_name":"Shuhong Huang","orcid":"https://orcid.org/0000-0003-2302-4200"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuhong Huang","raw_affiliation_strings":["International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040304876","display_name":"Jiongsong Hu","orcid":"https://orcid.org/0000-0001-5413-2533"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jiongsong Hu","raw_affiliation_strings":["Bioinformatics Center of AMMS, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center of AMMS, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091657786","display_name":"Xiaozhou Chen","orcid":"https://orcid.org/0009-0003-7588-1850"},"institutions":[{"id":"https://openalex.org/I145897649","display_name":"Minzu University of China","ror":"https://ror.org/0044e2g62","country_code":"CN","type":"education","lineage":["https://openalex.org/I145897649"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaozhou Chen","raw_affiliation_strings":["School of Mathematics and Computer Science, Yunnan Minzu University, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Computer Science, Yunnan Minzu University, Kunming, China","institution_ids":["https://openalex.org/I145897649"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021744998","display_name":"Ziguo Song","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziguo Song","raw_affiliation_strings":["International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066192991","display_name":"Junguo Dong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Junguo Dong","raw_affiliation_strings":["Bioinformatics Center of AMMS, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center of AMMS, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100463070","display_name":"Yao Liu","orcid":"https://orcid.org/0000-0002-0901-6354"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yao Liu","raw_affiliation_strings":["International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057361452","display_name":"Xingxu Huang","orcid":"https://orcid.org/0000-0001-8934-1247"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingxu Huang","raw_affiliation_strings":["Zhejiang Provincial Key Laboratory of Pancreatic Disease, the First Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-8934-1247","affiliations":[{"raw_affiliation_string":"Zhejiang Provincial Key Laboratory of Pancreatic Disease, the First Affiliated Hospital, and Institute of Translational Medicine, Zhejiang University School of Medicine, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101645609","display_name":"Shengqi Wang","orcid":"https://orcid.org/0000-0001-8100-7295"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Shengqi Wang","raw_affiliation_strings":["Bioinformatics Center of AMMS, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Center of AMMS, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100616459","display_name":"Xiaolong Wang","orcid":"https://orcid.org/0000-0003-1620-1344"},"institutions":[{"id":"https://openalex.org/I4210151987","display_name":"Ministry of Agriculture and Rural Affairs","ror":"https://ror.org/05ckt8b96","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaolong Wang","raw_affiliation_strings":["International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Joint Agriculture Research Center for Animal Bio-Breeding, Ministry of Agriculture and Rural Affairs/Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, China","institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I89652312"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035334249","display_name":"Wenjie Shu","orcid":"https://orcid.org/0000-0001-9044-2352"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Wenjie Shu","raw_affiliation_strings":["Bioinformatics Center of AMMS, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0001-9044-2352","affiliations":[{"raw_affiliation_string":"Bioinformatics Center of AMMS, Beijing, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5035334249","https://openalex.org/A5100616459","https://openalex.org/A5101645609"],"corresponding_institution_ids":["https://openalex.org/I4210151987","https://openalex.org/I89652312"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":{"value":9750,"currency":"EUR","value_usd":11690},"fwci":3.9018,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.94175908,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"5","issue":"11","first_page":"1261","last_page":"1274"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7912025451660156},{"id":"https://openalex.org/keywords/generalizability-theory","display_name":"Generalizability theory","score":0.7673279047012329},{"id":"https://openalex.org/keywords/prime","display_name":"Prime (order theory)","score":0.7292920351028442},{"id":"https://openalex.org/keywords/installation","display_name":"Installation","score":0.4928272068500519},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.48880764842033386},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.4369085133075714},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4169946312904358},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3714870512485504},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.35305672883987427},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24391335248947144}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7912025451660156},{"id":"https://openalex.org/C27158222","wikidata":"https://www.wikidata.org/wiki/Q5532422","display_name":"Generalizability theory","level":2,"score":0.7673279047012329},{"id":"https://openalex.org/C184992742","wikidata":"https://www.wikidata.org/wiki/Q7243229","display_name":"Prime (order theory)","level":2,"score":0.7292920351028442},{"id":"https://openalex.org/C146778888","wikidata":"https://www.wikidata.org/wiki/Q836862","display_name":"Installation","level":2,"score":0.4928272068500519},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.48880764842033386},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.4369085133075714},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4169946312904358},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3714870512485504},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.35305672883987427},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24391335248947144},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-023-00739-w","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00739-w","pdf_url":"https://www.nature.com/articles/s42256-023-00739-w.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1038/s42256-023-00739-w","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00739-w","pdf_url":"https://www.nature.com/articles/s42256-023-00739-w.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3198113934","display_name":null,"funder_award_id":"31901064","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4480746100","display_name":null,"funder_award_id":"ZHYXQNRC202103","funder_id":"https://openalex.org/F4320322595","funder_display_name":"Chongqing Medical University"},{"id":"https://openalex.org/G5436724080","display_name":null,"funder_award_id":"32272848","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G72892239","display_name":null,"funder_award_id":"CSTB2022NSCQ-MSX1059","funder_id":"https://openalex.org/F4320323172","funder_display_name":"Natural Science Foundation of Chongqing"},{"id":"https://openalex.org/G7667171791","display_name":"\u591a\u7ec4\u5b66\u878d\u5408\u6297\u75c5\u6bd2\u836f\u7269\u5bbf\u4e3b\u9776\u6807\u8fa8\u8bc6\u65b0\u6280\u672f\u7814\u7a76","funder_award_id":"81830101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322595","display_name":"Chongqing Medical University","ror":"https://ror.org/017z00e58"},{"id":"https://openalex.org/F4320323172","display_name":"Natural Science Foundation of Chongqing","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327639","display_name":"Centre Scientifique et Technique du B\u00e2timent","ror":"https://ror.org/02fsd1928"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388208513.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W571200655","https://openalex.org/W1678356000","https://openalex.org/W2058308089","https://openalex.org/W2115403315","https://openalex.org/W2137839571","https://openalex.org/W2157331557","https://openalex.org/W2174602966","https://openalex.org/W2295598076","https://openalex.org/W2770095154","https://openalex.org/W2911964244","https://openalex.org/W2915459742","https://openalex.org/W2919115771","https://openalex.org/W2981137429","https://openalex.org/W2999615587","https://openalex.org/W3012016445","https://openalex.org/W3020732568","https://openalex.org/W3034029360","https://openalex.org/W3087701445","https://openalex.org/W3089756407","https://openalex.org/W3099414278","https://openalex.org/W3131093799","https://openalex.org/W3155385010","https://openalex.org/W3159928091","https://openalex.org/W3169930322","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3193991572","https://openalex.org/W3202931255","https://openalex.org/W3206354438","https://openalex.org/W3206568807","https://openalex.org/W4200345742","https://openalex.org/W4220828927","https://openalex.org/W4220894855","https://openalex.org/W4221033791","https://openalex.org/W4221083162","https://openalex.org/W4223560446","https://openalex.org/W4226083802","https://openalex.org/W4298872162","https://openalex.org/W4308770459","https://openalex.org/W4316507374","https://openalex.org/W6964030157"],"related_works":["https://openalex.org/W2118717649","https://openalex.org/W2413243053","https://openalex.org/W410723623","https://openalex.org/W2015341305","https://openalex.org/W2035068594","https://openalex.org/W4225593417","https://openalex.org/W2573498121","https://openalex.org/W3022298670","https://openalex.org/W3160494304","https://openalex.org/W3006162251"],"abstract_inverted_index":{"Abstract":[0],"Prime":[1,34],"editors":[2],"(PEs)":[3],"are":[4,100],"promising":[5],"genome-editing":[6],"tools,":[7],"but":[8],"effective":[9],"optimization":[10,59,99],"of":[11,24,60,95,131,149],"prime-editing":[12],"guide":[13],"RNA":[14],"(pegRNA)":[15],"design":[16,58,98],"remains":[17],"a":[18,145],"challenge":[19],"owing":[20],"to":[21,47],"the":[22,54,91,113,128],"lack":[23],"accurate":[25],"and":[26,51,57,93,116,143],"broadly":[27],"applicable":[28],"approaches.":[29,125],"Here":[30],"we":[31],"develop":[32],"Optimized":[33],"Editing":[35],"Design":[36],"(OPED),":[37],"an":[38],"interpretable":[39],"nucleotide":[40],"language":[41],"model":[42],"that":[43],"leverages":[44],"transfer":[45],"learning":[46],"improve":[48],"its":[49,69],"accuracy":[50],"generalizability":[52],"for":[53,139,151],"efficiency":[55,73],"prediction":[56,74],"pegRNAs.":[61],"Comprehensive":[62],"validations":[63],"on":[64],"various":[65,105],"published":[66],"datasets":[67],"demonstrate":[68],"broad":[70],"applicability":[71],"in":[72,97,112],"across":[75],"diverse":[76],"scenarios.":[77],"Notably,":[78],"pegRNAs":[79,111],"with":[80],"high":[81],"OPED":[82,96,120,150],"scores":[83],"consistently":[84,121],"show":[85],"significantly":[86],"increased":[87],"editing":[88,118],"efficiencies.":[89],"Furthermore,":[90],"versatility":[92],"efficacy":[94],"confirmed":[101],"by":[102],"efficiently":[103],"installing":[104],"ClinVar":[106],"pathogenic":[107,141],"variants":[108,142],"using":[109],"optimized":[110,132],"PE2,":[114],"PE3/PE3b":[115],"ePE":[117],"systems.":[119],"outperforms":[122],"existing":[123],"state-of-the-art":[124],"We":[126],"construct":[127],"OPEDVar":[129],"database":[130],"designs":[133],"from":[134],"over":[135],"two":[136],"billion":[137],"candidates":[138],"all":[140],"provide":[144],"user-friendly":[146],"web":[147],"application":[148],"any":[152],"desired":[153],"edit.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
