{"id":"https://openalex.org/W4384522208","doi":"https://doi.org/10.1038/s42256-023-00684-8","title":"Hypergraph factorization for multi-tissue gene expression imputation","display_name":"Hypergraph factorization for multi-tissue gene expression imputation","publication_year":2023,"publication_date":"2023-07-17","ids":{"openalex":"https://openalex.org/W4384522208","doi":"https://doi.org/10.1038/s42256-023-00684-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/37771758"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-023-00684-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00684-8","pdf_url":"https://www.nature.com/articles/s42256-023-00684-8.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.nature.com/articles/s42256-023-00684-8.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055834118","display_name":"Ram\u00f3n Vi\u00f1as","orcid":"https://orcid.org/0000-0003-2411-4478"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ramon Vi\u00f1as","raw_affiliation_strings":["Department of Computer Science and Technology, University of Cambridge","Department of Computer Science and Technology, University of Cambridge, Cambridge, UK"],"raw_orcid":"https://orcid.org/0000-0003-2411-4478","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041429006","display_name":"Chaitanya K. Joshi","orcid":"https://orcid.org/0000-0003-4722-1815"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Chaitanya K. Joshi","raw_affiliation_strings":["Department of Computer Science and Technology, University of Cambridge","Department of Computer Science and Technology, University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038221812","display_name":"Dobrik Georgiev","orcid":"https://orcid.org/0000-0002-5649-7613"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dobrik Georgiev","raw_affiliation_strings":["Department of Computer Science and Technology, University of Cambridge","Department of Computer Science and Technology, University of Cambridge, Cambridge, UK"],"raw_orcid":"https://orcid.org/0000-0002-5649-7613","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Phillip Lin","orcid":"https://orcid.org/0009-0003-6988-0237"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phillip Lin","raw_affiliation_strings":["Division of Genetic Medicine, Vanderbilt University Medical Center","Division of Genetic Medicine, Vanderbilt University Medical Center, Nashville, TN, USA"],"raw_orcid":"https://orcid.org/0009-0003-6988-0237","affiliations":[{"raw_affiliation_string":"Division of Genetic Medicine, Vanderbilt University Medical Center","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Division of Genetic Medicine, Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053530632","display_name":"Bianca Dumitrascu","orcid":"https://orcid.org/0000-0001-8328-2354"},"institutions":[{"id":"https://openalex.org/I4210110041","display_name":"Systems Dynamics (United States)","ror":"https://ror.org/01z7k2z53","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110041"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bianca Dumitrascu","raw_affiliation_strings":["Department of Statistics and Irving Institute for Cancer Dynamics, Columbia University","Department of Statistics and Irving Institute for Cancer Dynamics, Columbia University, New York City, NY, USA"],"raw_orcid":"https://orcid.org/0000-0001-8328-2354","affiliations":[{"raw_affiliation_string":"Department of Statistics and Irving Institute for Cancer Dynamics, Columbia University","institution_ids":["https://openalex.org/I4210110041"]},{"raw_affiliation_string":"Department of Statistics and Irving Institute for Cancer Dynamics, Columbia University, New York City, NY, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091036407","display_name":"Eric R. Gamazon","orcid":"https://orcid.org/0000-0003-4204-8734"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4210158597","display_name":"MRC Epidemiology Unit","ror":"https://ror.org/052578691","country_code":"GB","type":"facility","lineage":["https://openalex.org/I241749","https://openalex.org/I4210087105","https://openalex.org/I4210158597","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Eric R. Gamazon","raw_affiliation_strings":["Vanderbilt Genetics Institute and Data Science Institute, MRC Epidemiology Unit, University of Cambridge","Vanderbilt Genetics Institute and Data Science Institute, MRC Epidemiology Unit, University of Cambridge, Cambridge, UK"],"raw_orcid":"https://orcid.org/0000-0003-4204-8734","affiliations":[{"raw_affiliation_string":"Vanderbilt Genetics Institute and Data Science Institute, MRC Epidemiology Unit, University of Cambridge","institution_ids":["https://openalex.org/I4210158597"]},{"raw_affiliation_string":"Vanderbilt Genetics Institute and Data Science Institute, MRC Epidemiology Unit, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I4210158597","https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056748708","display_name":"P\u00edetro Li\u00f3","orcid":"https://orcid.org/0000-0002-0540-5053"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Pietro Li\u00f2","raw_affiliation_strings":["Department of Computer Science and Technology, University of Cambridge","Department of Computer Science and Technology, University of Cambridge, Cambridge, UK"],"raw_orcid":"https://orcid.org/0000-0002-0540-5053","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Computer Science and Technology, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053530632","https://openalex.org/A5056748708","https://openalex.org/A5091036407"],"corresponding_institution_ids":["https://openalex.org/I241749","https://openalex.org/I4210110041","https://openalex.org/I4210158597","https://openalex.org/I78577930"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":{"value":9750,"currency":"EUR","value_usd":11690},"fwci":4.2091,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.94654583,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"5","issue":"7","first_page":"739","last_page":"753"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.7122077345848083},{"id":"https://openalex.org/keywords/imputation","display_name":"Imputation (statistics)","score":0.5585793256759644},{"id":"https://openalex.org/keywords/factorization","display_name":"Factorization","score":0.5327375531196594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5023090839385986},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4497513473033905},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.41979801654815674},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32495570182800293},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3154974579811096},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2601426839828491},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.18768149614334106},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1606987714767456},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.07423987984657288}],"concepts":[{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.7122077345848083},{"id":"https://openalex.org/C58041806","wikidata":"https://www.wikidata.org/wiki/Q1660484","display_name":"Imputation (statistics)","level":3,"score":0.5585793256759644},{"id":"https://openalex.org/C187834632","wikidata":"https://www.wikidata.org/wiki/Q188804","display_name":"Factorization","level":2,"score":0.5327375531196594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5023090839385986},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4497513473033905},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.41979801654815674},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32495570182800293},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3154974579811096},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2601426839828491},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.18768149614334106},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1606987714767456},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.07423987984657288},{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1038/s42256-023-00684-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00684-8","pdf_url":"https://www.nature.com/articles/s42256-023-00684-8.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:37771758","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37771758","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10538467","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10538467","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10538467/pdf/nihms-1927789.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},{"id":"pmh:oai:iris.uniroma1.it:11573/1721251","is_oa":true,"landing_page_url":"https://hdl.handle.net/11573/1721251","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/355237","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/355237","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1038/s42256-023-00684-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00684-8","pdf_url":"https://www.nature.com/articles/s42256-023-00684-8.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G2300185400","display_name":null,"funder_award_id":"R01 MH126459","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G3041820737","display_name":null,"funder_award_id":"R01MH126459","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4209728069","display_name":null,"funder_award_id":"R01HG011138","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G4574204677","display_name":null,"funder_award_id":"R35HG010718","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4594569646","display_name":null,"funder_award_id":"R35 HG010718","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5672855962","display_name":null,"funder_award_id":"R01MH126459","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G5902859403","display_name":null,"funder_award_id":"R01HG011138","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6310329829","display_name":null,"funder_award_id":"R01 HG011138","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6533126078","display_name":null,"funder_award_id":"R35HG010718","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7388632077","display_name":null,"funder_award_id":"R01 GM140287","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7389299803","display_name":null,"funder_award_id":"AG068026","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8313695057","display_name":null,"funder_award_id":"R56 AG068026","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8468264485","display_name":null,"funder_award_id":"R01HG011138","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309151","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34"},{"id":"https://openalex.org/F4320328257","display_name":"Foundation for Research in Rheumatology","ror":null},{"id":"https://openalex.org/F4320328810","display_name":"Fundaci\u00f3n Rafael del Pino","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4384522208.pdf"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1504158565","https://openalex.org/W1533942137","https://openalex.org/W1606273823","https://openalex.org/W1964895626","https://openalex.org/W1986184556","https://openalex.org/W2007570855","https://openalex.org/W2011301426","https://openalex.org/W2017260345","https://openalex.org/W2040912377","https://openalex.org/W2046831513","https://openalex.org/W2055568103","https://openalex.org/W2057857889","https://openalex.org/W2087200610","https://openalex.org/W2093529520","https://openalex.org/W2098040959","https://openalex.org/W2100697281","https://openalex.org/W2107018762","https://openalex.org/W2110065044","https://openalex.org/W2123060905","https://openalex.org/W2124999415","https://openalex.org/W2130410032","https://openalex.org/W2136787567","https://openalex.org/W2162491638","https://openalex.org/W2318332039","https://openalex.org/W2324202603","https://openalex.org/W2328892620","https://openalex.org/W2342249984","https://openalex.org/W2403934794","https://openalex.org/W2406604088","https://openalex.org/W2407468727","https://openalex.org/W2412481123","https://openalex.org/W2600872530","https://openalex.org/W2732310387","https://openalex.org/W2738018780","https://openalex.org/W2797402052","https://openalex.org/W2800392236","https://openalex.org/W2808020079","https://openalex.org/W2811205482","https://openalex.org/W2889326414","https://openalex.org/W2893955328","https://openalex.org/W2904763455","https://openalex.org/W2949177718","https://openalex.org/W2958554910","https://openalex.org/W2970971581","https://openalex.org/W3000745939","https://openalex.org/W3004974539","https://openalex.org/W3012280517","https://openalex.org/W3035965352","https://openalex.org/W3089716446","https://openalex.org/W3099878876","https://openalex.org/W3121168830","https://openalex.org/W3133859624","https://openalex.org/W3150324899","https://openalex.org/W3150635270","https://openalex.org/W3156894222","https://openalex.org/W3163773401","https://openalex.org/W3196971188","https://openalex.org/W3197364483","https://openalex.org/W4210522554","https://openalex.org/W4280633014","https://openalex.org/W4286795917","https://openalex.org/W4295728955","https://openalex.org/W4297733535","https://openalex.org/W6675354045","https://openalex.org/W6739901393","https://openalex.org/W6950322510","https://openalex.org/W6969049267"],"related_works":["https://openalex.org/W4376608589","https://openalex.org/W3138003926","https://openalex.org/W4300037846","https://openalex.org/W1630514295","https://openalex.org/W1537073411","https://openalex.org/W2963081352","https://openalex.org/W2472555608","https://openalex.org/W4376608938","https://openalex.org/W4288275998","https://openalex.org/W4214498971"],"abstract_inverted_index":{"Integrating":[0],"gene":[1,64],"expression":[2],"across":[3],"tissues":[4,30,75,90,112],"and":[5,19,40,62,78,91,141,146],"cell":[6],"types":[7],"is":[8,37,67],"crucial":[9],"for":[10,57],"understanding":[11],"the":[12,85,132,139],"coordinated":[13],"biological":[14],"mechanisms":[15],"that":[16],"drive":[17],"disease":[18],"characterise":[20],"homeostasis.":[21],"However,":[22],"traditional":[23],"multitissue":[24],"integration":[25,143],"methods":[26],"cannot":[27],"handle":[28],"uncollected":[29],"or":[31],"rely":[32],"on":[33,96],"genotype":[34],"information,":[35],"which":[36],"often":[38],"unavailable":[39],"subject":[41],"to":[42,83,121],"privacy":[43],"concerns.":[44],"Here":[45],"we":[46],"present":[47],"HYFA":[48,66,101,136],"(Hypergraph":[49],"Factorisation),":[50],"a":[51,70],"parameter-efficient":[52],"graph":[53],"representation":[54],"learning":[55],"approach":[56],"joint":[58],"imputation":[59],"of":[60,73,89,144],"multi-tissue":[61],"cell-type":[63,147],"expression.":[65],"genotype-agnostic,":[68],"supports":[69],"variable":[71],"number":[72],"collected":[74],"per":[76],"individual,":[77],"imposes":[79],"strong":[80],"inductive":[81],"biases":[82],"leverage":[84],"shared":[86],"regulatory":[87,124],"architecture":[88],"genes.":[92],"In":[93],"performance":[94,104],"comparison":[95],"Genotype-Tissue":[97],"Expression":[98],"project":[99],"data,":[100],"achieves":[102],"superior":[103],"over":[105,131],"existing":[106],"methods,":[107],"especially":[108],"when":[109],"multiple":[110],"reference":[111],"are":[113],"available.":[114],"The":[115],"HYFA-imputed":[116],"dataset":[117],"can":[118,137],"be":[119],"used":[120],"identify":[122],"replicable":[123],"genetic":[125],"variations":[126],"(eQTLs),":[127],"with":[128],"substantial":[129],"gains":[130],"original":[133],"incomplete":[134],"dataset.":[135],"accelerate":[138],"effective":[140],"scalable":[142],"tissue":[145],"transcriptome":[148],"biorepositories.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":12}],"updated_date":"2026-06-29T08:53:18.405633","created_date":"2025-10-10T00:00:00"}
