{"id":"https://openalex.org/W4381679608","doi":"https://doi.org/10.1038/s42256-023-00654-0","title":"Knowledge graph-enhanced molecular contrastive learning with functional prompt","display_name":"Knowledge graph-enhanced molecular contrastive learning with functional prompt","publication_year":2023,"publication_date":"2023-05-04","ids":{"openalex":"https://openalex.org/W4381679608","doi":"https://doi.org/10.1038/s42256-023-00654-0"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-023-00654-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00654-0","pdf_url":"https://www.nature.com/articles/s42256-023-00654-0.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.nature.com/articles/s42256-023-00654-0.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051839900","display_name":"Fang Yin","orcid":"https://orcid.org/0000-0001-9538-848X"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yin Fang","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University, Hangzhou, China","College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China","ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-9538-848X","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037546695","display_name":"Qiang Zhang","orcid":"https://orcid.org/0000-0003-1636-5269"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiang Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University, Hangzhou, China","ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-1636-5269","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089259739","display_name":"Ningyu Zhang","orcid":"https://orcid.org/0000-0002-1970-0678"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I45928872","display_name":"Alibaba Group (China)","ror":"https://ror.org/00k642b80","country_code":"CN","type":"company","lineage":["https://openalex.org/I45928872"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningyu Zhang","raw_affiliation_strings":["Alibaba-ZJU Frontier Technology Research Center, Hangzhou, China","College of Computer Science and Technology, Zhejiang University, Hangzhou, China","School of Software Technology, Zhejiang University, Ningbo, China"],"raw_orcid":"https://orcid.org/0000-0002-1970-0678","affiliations":[{"raw_affiliation_string":"Alibaba-ZJU Frontier Technology Research Center, Hangzhou, China","institution_ids":["https://openalex.org/I45928872"]},{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"School of Software Technology, Zhejiang University, Ningbo, China","institution_ids":["https://openalex.org/I109935558","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100345062","display_name":"Zhuo Chen","orcid":"https://orcid.org/0000-0001-9991-6892"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuo Chen","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University, Hangzhou, China","ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-9991-6892","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101552401","display_name":"Xiang Zhuang","orcid":"https://orcid.org/0000-0002-0253-1476"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang Zhuang","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University, Hangzhou, China","ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-0253-1476","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074240680","display_name":"Xin Shao","orcid":"https://orcid.org/0000-0002-1928-3878"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Shao","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-1928-3878","affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060364374","display_name":"Xiaohui Fan","orcid":"https://orcid.org/0000-0002-6336-3007"},"institutions":[{"id":"https://openalex.org/I4210121747","display_name":"Zhejiang Modern Chinese Medicine and Natural Medicine Research Institute (China)","ror":"https://ror.org/02z4pnd66","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210121747"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaohui Fan","raw_affiliation_strings":["College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China","Future Health Laboratory, Innovation Center of Yangtze River Delta, Zhejiang University, Jiaxing, China","National Key Laboratory of Modern Chinese Medicine Innovation and Manufacturing, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-6336-3007","affiliations":[{"raw_affiliation_string":"College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Future Health Laboratory, Innovation Center of Yangtze River Delta, Zhejiang University, Jiaxing, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"National Key Laboratory of Modern Chinese Medicine Innovation and Manufacturing, Hangzhou, China","institution_ids":["https://openalex.org/I4210121747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102018239","display_name":"Huajun Chen","orcid":"https://orcid.org/0000-0001-5496-7442"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I45928872","display_name":"Alibaba Group (China)","ror":"https://ror.org/00k642b80","country_code":"CN","type":"company","lineage":["https://openalex.org/I45928872"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huajun Chen","raw_affiliation_strings":["Alibaba-ZJU Frontier Technology Research Center, Hangzhou, China","College of Computer Science and Technology, Zhejiang University, Hangzhou, China","Donghai Laboratory, Zhoushan, China","ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-5496-7442","affiliations":[{"raw_affiliation_string":"Alibaba-ZJU Frontier Technology Research Center, Hangzhou, China","institution_ids":["https://openalex.org/I45928872"]},{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Donghai Laboratory, Zhoushan, China","institution_ids":[]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5037546695","https://openalex.org/A5060364374","https://openalex.org/A5102018239"],"corresponding_institution_ids":["https://openalex.org/I168879160","https://openalex.org/I4210121747","https://openalex.org/I45928872","https://openalex.org/I76130692"],"apc_list":{"value":11690,"currency":"USD","value_usd":11690},"apc_paid":{"value":11690,"currency":"USD","value_usd":11690},"fwci":30.0156,"has_fulltext":true,"cited_by_count":212,"citation_normalized_percentile":{"value":0.99798343,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"5","issue":"5","first_page":"542","last_page":"553"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8010699152946472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7708649635314941},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.5795628428459167},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5521485209465027},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.5450615286827087},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.4969935715198517},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47656750679016113},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.43198710680007935},{"id":"https://openalex.org/keywords/molecular-graph","display_name":"Molecular graph","score":0.4210440218448639},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.4129006862640381},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3601406514644623},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.2898789048194885},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12394708395004272}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8010699152946472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7708649635314941},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.5795628428459167},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5521485209465027},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.5450615286827087},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.4969935715198517},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47656750679016113},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.43198710680007935},{"id":"https://openalex.org/C2780022179","wikidata":"https://www.wikidata.org/wiki/Q1986794","display_name":"Molecular graph","level":3,"score":0.4210440218448639},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.4129006862640381},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3601406514644623},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.2898789048194885},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12394708395004272},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-023-00654-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00654-0","pdf_url":"https://www.nature.com/articles/s42256-023-00654-0.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1038/s42256-023-00654-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-023-00654-0","pdf_url":"https://www.nature.com/articles/s42256-023-00654-0.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1348921258","display_name":null,"funder_award_id":"DH-2022ZY0012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2126095010","display_name":null,"funder_award_id":"226-2022-00226","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2163126942","display_name":null,"funder_award_id":"202002","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G3961709845","display_name":null,"funder_award_id":"NSFC91846204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4394478923","display_name":null,"funder_award_id":"ZYYCXTD-D-202002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G525500535","display_name":null,"funder_award_id":"[2020]-02","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6776971470","display_name":null,"funder_award_id":"NSFCU19B2027","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4381679608.pdf"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1492230849","https://openalex.org/W1757990252","https://openalex.org/W1997362383","https://openalex.org/W2008505552","https://openalex.org/W2020106098","https://openalex.org/W2060531713","https://openalex.org/W2096541451","https://openalex.org/W2145578524","https://openalex.org/W2153464267","https://openalex.org/W2153693853","https://openalex.org/W2461470610","https://openalex.org/W2594183968","https://openalex.org/W2617241599","https://openalex.org/W2785720803","https://openalex.org/W2899070097","https://openalex.org/W2944466104","https://openalex.org/W2964199361","https://openalex.org/W3034516664","https://openalex.org/W3035011799","https://openalex.org/W3042595256","https://openalex.org/W3104298728","https://openalex.org/W3166265964","https://openalex.org/W3185341429","https://openalex.org/W3195415198","https://openalex.org/W3198490223","https://openalex.org/W3198511414","https://openalex.org/W3198974858","https://openalex.org/W3206711231","https://openalex.org/W4213077304","https://openalex.org/W4213269078","https://openalex.org/W4214868967","https://openalex.org/W4281783323","https://openalex.org/W4283793745","https://openalex.org/W6772452955"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W4292070284","https://openalex.org/W4312933959","https://openalex.org/W4386298164","https://openalex.org/W2904656109","https://openalex.org/W4229080059","https://openalex.org/W4286257253","https://openalex.org/W2916853871","https://openalex.org/W2798664319","https://openalex.org/W3193994998"],"abstract_inverted_index":{"Abstract":[0],"Deep":[1],"learning":[2,103],"models":[3],"can":[4],"accurately":[5],"predict":[6],"molecular":[7,101,143,173,200],"properties":[8],"and":[9,19,35,59,87,116,177,202],"help":[10],"making":[11],"the":[12,32,82,154,160],"search":[13],"for":[14,98,182],"potential":[15],"drug":[16,191],"candidates":[17],"faster":[18],"more":[20,189],"efficient.":[21],"Many":[22],"existing":[23],"methods":[24],"are":[25],"purely":[26],"data":[27,47],"driven,":[28],"focusing":[29],"on":[30,171],"exploiting":[31,108],"intrinsic":[33],"topology":[34],"construction":[36],"rules":[37],"of":[38,64,66,85],"molecules":[39],"without":[40,141],"any":[41],"chemical":[42,57,76],"prior":[43],"information.":[44],"The":[45],"high":[46],"dependency":[48],"makes":[49],"them":[50],"difficult":[51],"to":[52,54,61,69,80,136,152,188],"generalize":[53],"a":[55,62,75,96,124,195],"wider":[56],"space":[58],"leads":[60],"lack":[63],"interpretability":[65],"predictions.":[67,184],"Here,":[68],"address":[70],"this":[71],"issue,":[72],"we":[73,126,146],"introduce":[74],"element-oriented":[77,120],"knowledge":[78,84,99,112,121,157,197],"graph":[79,122,131],"summarize":[81],"basic":[83],"elements":[86],"their":[88],"closely":[89],"related":[90],"functional":[91,105,148],"groups.":[92],"We":[93],"further":[94],"propose":[95],"method":[97],"graph-enhanced":[100],"contrastive":[102],"with":[104,119],"prompt":[106],"(KANO),":[107],"external":[109],"fundamental":[110],"domain":[111],"in":[113,133,150],"both":[114],"pre-training":[115,135],"fine-tuning.":[117],"Specifically,":[118],"as":[123],"prior,":[125,198],"first":[127],"design":[128,192],"an":[129],"element-guided":[130],"augmentation":[132],"contrastive-based":[134],"explore":[137],"microscopic":[138],"atomic":[139],"associations":[140],"violating":[142],"semantics.":[144],"Then,":[145],"learn":[147],"prompts":[149],"fine-tuning":[151],"evoke":[153],"downstream":[155],"task-related":[156],"acquired":[158],"by":[159,193],"pre-trained":[161],"model.":[162],"Extensive":[163],"experiments":[164],"show":[165],"that":[166],"KANO":[167],"outperforms":[168],"state-of-the-art":[169],"baselines":[170],"14":[172],"property":[174],"prediction":[175,204],"datasets":[176],"provides":[178],"chemically":[179],"sound":[180],"explanations":[181],"its":[183],"This":[185],"work":[186],"contributes":[187],"efficient":[190],"offering":[194],"high-quality":[196],"interpretable":[199],"representation":[201],"superior":[203],"performance.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":52},{"year":2025,"cited_by_count":90},{"year":2024,"cited_by_count":55},{"year":2023,"cited_by_count":15}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
