{"id":"https://openalex.org/W4360999048","doi":"https://doi.org/10.1038/s42256-023-00634-4","title":"Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning","display_name":"Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning","publication_year":2023,"publication_date":"2023-03-27","ids":{"openalex":"https://openalex.org/W4360999048","doi":"https://doi.org/10.1038/s42256-023-00634-4"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-023-00634-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-023-00634-4","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078956320","display_name":"Xingang Peng","orcid":"https://orcid.org/0000-0001-5315-2639"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210100255","display_name":"Beijing Academy of Artificial Intelligence","ror":"https://ror.org/016a74861","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210100255"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingang Peng","raw_affiliation_strings":["Institute for Artificial Intelligence, Peking University, Beijing, China","School of Intelligence Science and Technology, Peking University, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0001-5315-2639","affiliations":[{"raw_affiliation_string":"Institute for Artificial Intelligence, Peking University, Beijing, China","institution_ids":["https://openalex.org/I4210100255","https://openalex.org/I20231570"]},{"raw_affiliation_string":"School of Intelligence Science and Technology, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054469496","display_name":"Yipin Lei","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yipin Lei","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104109221","display_name":"Peiyuan Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peiyuan Feng","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054462839","display_name":"Lemei Jia","orcid":"https://orcid.org/0000-0001-6233-6261"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lemei Jia","raw_affiliation_strings":["Institute for Immunology and School of Medicine, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Immunology and School of Medicine, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074269040","display_name":"Jianzhu Ma","orcid":"https://orcid.org/0000-0002-8236-6609"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianzhu Ma","raw_affiliation_strings":["Institute for AI Industry Research, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for AI Industry Research, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067578751","display_name":"Dan Zhao","orcid":"https://orcid.org/0000-0003-0195-6031"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dan Zhao","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-0195-6031","affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009826239","display_name":"Jianyang Zeng","orcid":"https://orcid.org/0000-0003-0950-7716"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianyang Zeng","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-0950-7716","affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009826239","https://openalex.org/A5067578751"],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":11.8708,"has_fulltext":false,"cited_by_count":85,"citation_normalized_percentile":{"value":0.99049841,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"5","issue":"4","first_page":"395","last_page":"407"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9610000252723694,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.9668810367584229},{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.7610119581222534},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6977931261062622},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4500749409198761},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4339313507080078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42295658588409424},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.3448042571544647},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3140519857406616},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.301758348941803},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17556306719779968},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.09589561820030212}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.9668810367584229},{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.7610119581222534},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6977931261062622},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4500749409198761},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4339313507080078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42295658588409424},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.3448042571544647},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3140519857406616},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.301758348941803},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17556306719779968},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.09589561820030212}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-023-00634-4","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-023-00634-4","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3927232695","display_name":"\u89e3\u6790\u57fa\u56e0\u7ec4\u4e09\u7ef4\u6298\u53e0\u7684\u8ba1\u7b97\u6a21\u578b\u7814\u7a76","funder_award_id":"61872216","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7314568505","display_name":null,"funder_award_id":"31900862","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W1768303176","https://openalex.org/W1822028895","https://openalex.org/W1855237549","https://openalex.org/W1964823826","https://openalex.org/W1971543858","https://openalex.org/W1974782594","https://openalex.org/W1993446370","https://openalex.org/W2009015785","https://openalex.org/W2049204549","https://openalex.org/W2066852475","https://openalex.org/W2068750493","https://openalex.org/W2077864494","https://openalex.org/W2082947088","https://openalex.org/W2084653587","https://openalex.org/W2092075745","https://openalex.org/W2106582884","https://openalex.org/W2115770884","https://openalex.org/W2124668663","https://openalex.org/W2124985346","https://openalex.org/W2155541015","https://openalex.org/W2155740919","https://openalex.org/W2522458876","https://openalex.org/W2528445598","https://openalex.org/W2583907533","https://openalex.org/W2584679456","https://openalex.org/W2613978126","https://openalex.org/W2616247523","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2765910235","https://openalex.org/W2766169371","https://openalex.org/W2775848633","https://openalex.org/W2800677598","https://openalex.org/W2808043011","https://openalex.org/W2891884829","https://openalex.org/W2894849296","https://openalex.org/W2898389621","https://openalex.org/W2963039693","https://openalex.org/W2978289879","https://openalex.org/W2979326653","https://openalex.org/W2979330275","https://openalex.org/W2990308980","https://openalex.org/W2995987578","https://openalex.org/W2995997429","https://openalex.org/W3005844923","https://openalex.org/W3019745511","https://openalex.org/W3033358337","https://openalex.org/W3035945885","https://openalex.org/W3040528450","https://openalex.org/W3080758869","https://openalex.org/W3102564565","https://openalex.org/W3113525558","https://openalex.org/W3140633058","https://openalex.org/W3159177617","https://openalex.org/W3164277106","https://openalex.org/W3198942356","https://openalex.org/W3199607358","https://openalex.org/W4206563428","https://openalex.org/W4281557145","https://openalex.org/W4285392187"],"related_works":["https://openalex.org/W2059333433","https://openalex.org/W2040128205","https://openalex.org/W2060075608","https://openalex.org/W2026444950","https://openalex.org/W2092033815","https://openalex.org/W4395677914","https://openalex.org/W2168929838","https://openalex.org/W2140205174","https://openalex.org/W2037024992","https://openalex.org/W2064485034"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":41},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":5}],"updated_date":"2026-06-30T13:55:48.251075","created_date":"2025-10-10T00:00:00"}
