{"id":"https://openalex.org/W4296128995","doi":"https://doi.org/10.1038/s42256-022-00527-y","title":"Accelerated rational PROTAC design via deep learning and molecular simulations","display_name":"Accelerated rational PROTAC design via deep learning and molecular simulations","publication_year":2022,"publication_date":"2022-09-15","ids":{"openalex":"https://openalex.org/W4296128995","doi":"https://doi.org/10.1038/s42256-022-00527-y"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-022-00527-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-022-00527-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10072/418556","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075817762","display_name":"Shuangjia Zheng","orcid":"https://orcid.org/0000-0001-9747-4285"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shuangjia Zheng","raw_affiliation_strings":["Galixir Technologies, Beijing, China","School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"Galixir Technologies, Beijing, China","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001895046","display_name":"Youhai Tan","orcid":"https://orcid.org/0000-0002-2226-7115"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Youhai Tan","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344951","display_name":"Zhenyu Wang","orcid":"https://orcid.org/0000-0002-4132-4699"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhenyu Wang","raw_affiliation_strings":["Galixir Technologies, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Galixir Technologies, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044707901","display_name":"Chengtao Li","orcid":"https://orcid.org/0000-0001-6852-9144"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chengtao Li","raw_affiliation_strings":["Galixir Technologies, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Galixir Technologies, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113751190","display_name":"Zhiqing Zhang","orcid":"https://orcid.org/0000-0001-5871-6499"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhiqing Zhang","raw_affiliation_strings":["Galixir Technologies, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Galixir Technologies, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101600641","display_name":"Xu Sang","orcid":"https://orcid.org/0000-0002-0099-3511"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xu Sang","raw_affiliation_strings":["Galixir Technologies, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Galixir Technologies, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100729956","display_name":"Hongming Chen","orcid":"https://orcid.org/0000-0002-8065-8333"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hongming Chen","raw_affiliation_strings":["Guangzhou Laboratory, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"Guangzhou Laboratory, Guangzhou, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5075817762"],"corresponding_institution_ids":["https://openalex.org/I157773358"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":10.1624,"has_fulltext":false,"cited_by_count":131,"citation_normalized_percentile":{"value":0.990651,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"4","issue":"9","first_page":"739","last_page":"748"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12534","display_name":"Protein Degradation and Inhibitors","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10649","display_name":"Multiple Myeloma Research and Treatments","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bromodomain","display_name":"Bromodomain","score":0.5766320824623108},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.538560688495636},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.503410279750824},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.47647449374198914},{"id":"https://openalex.org/keywords/rational-design","display_name":"Rational design","score":0.4752628207206726},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4579336941242218},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36573493480682373},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1873733103275299},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.1822161078453064},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.11324214935302734},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09270694851875305},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07213059067726135}],"concepts":[{"id":"https://openalex.org/C74401373","wikidata":"https://www.wikidata.org/wiki/Q1829843","display_name":"Bromodomain","level":4,"score":0.5766320824623108},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.538560688495636},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.503410279750824},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.47647449374198914},{"id":"https://openalex.org/C53105671","wikidata":"https://www.wikidata.org/wiki/Q14777816","display_name":"Rational design","level":2,"score":0.4752628207206726},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4579336941242218},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36573493480682373},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1873733103275299},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.1822161078453064},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.11324214935302734},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09270694851875305},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07213059067726135},{"id":"https://openalex.org/C119157956","wikidata":"https://www.wikidata.org/wiki/Q796604","display_name":"Acetylation","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1038/s42256-022-00527-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-022-00527-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/418556","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/418556","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"pmh:oai:research-repository.griffith.edu.au:10072/418556","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/418556","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W1757990252","https://openalex.org/W1984994707","https://openalex.org/W1988037271","https://openalex.org/W1997764055","https://openalex.org/W2005518172","https://openalex.org/W2043509228","https://openalex.org/W2105344995","https://openalex.org/W2105649494","https://openalex.org/W2151460035","https://openalex.org/W2151683271","https://openalex.org/W2194775991","https://openalex.org/W2529996553","https://openalex.org/W2553908226","https://openalex.org/W2565684601","https://openalex.org/W2578240541","https://openalex.org/W2610148085","https://openalex.org/W2733066269","https://openalex.org/W2736137960","https://openalex.org/W2756205407","https://openalex.org/W2765224015","https://openalex.org/W2767251210","https://openalex.org/W2806672448","https://openalex.org/W2903964626","https://openalex.org/W2909034820","https://openalex.org/W2909353434","https://openalex.org/W2912114516","https://openalex.org/W2914635984","https://openalex.org/W2916581152","https://openalex.org/W2936661052","https://openalex.org/W2937307539","https://openalex.org/W2938148420","https://openalex.org/W2940242941","https://openalex.org/W2971690404","https://openalex.org/W2983017086","https://openalex.org/W2989615256","https://openalex.org/W2997931834","https://openalex.org/W3005769002","https://openalex.org/W3011847211","https://openalex.org/W3025593963","https://openalex.org/W3027325047","https://openalex.org/W3042826782","https://openalex.org/W3044640842","https://openalex.org/W3088870471","https://openalex.org/W3090754737","https://openalex.org/W3092275826","https://openalex.org/W3113447514","https://openalex.org/W3128148409","https://openalex.org/W3130832757","https://openalex.org/W3131648425","https://openalex.org/W3135156311","https://openalex.org/W3138705992","https://openalex.org/W3156335568","https://openalex.org/W3156522942","https://openalex.org/W3166285126","https://openalex.org/W3167897185","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3213530673","https://openalex.org/W4200302906","https://openalex.org/W4200509818","https://openalex.org/W4248107770","https://openalex.org/W6730111887","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W2990739655","https://openalex.org/W2439473447","https://openalex.org/W2797801723","https://openalex.org/W2791649525","https://openalex.org/W4247606964","https://openalex.org/W2139480674","https://openalex.org/W4386704776","https://openalex.org/W2041652616","https://openalex.org/W4380075502","https://openalex.org/W2189969113"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":50},{"year":2024,"cited_by_count":38},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":3}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
