{"id":"https://openalex.org/W4293237882","doi":"https://doi.org/10.1038/s42256-022-00518-z","title":"Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale","display_name":"Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale","publication_year":2022,"publication_date":"2022-08-25","ids":{"openalex":"https://openalex.org/W4293237882","doi":"https://doi.org/10.1038/s42256-022-00518-z"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-022-00518-z","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-022-00518-z","pdf_url":"https://www.nature.com/articles/s42256-022-00518-z.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.nature.com/articles/s42256-022-00518-z.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083408391","display_name":"Meng Yang","orcid":"https://orcid.org/0000-0001-5630-6357"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["CN","DK"],"is_corresponding":true,"raw_author_name":"Meng Yang","raw_affiliation_strings":["Department of Biology, University of Copenhagen, Copenhagen, Denmark","MGI, BGI-Shenzhen, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"MGI, BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051774932","display_name":"Yueyuxiao Yang","orcid":"https://orcid.org/0000-0001-8312-7100"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueyuxiao Yang","raw_affiliation_strings":["MGI, BGI-Shenzhen, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"MGI, BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044594262","display_name":"Chenxi Xie","orcid":"https://orcid.org/0000-0002-9721-1853"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenxi Xie","raw_affiliation_strings":["MGI, BGI-Shenzhen, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"MGI, BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090433321","display_name":"Ming Ni","orcid":"https://orcid.org/0000-0001-9465-2787"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ming Ni","raw_affiliation_strings":["MGI-QingDao, BGI-Shenzhen, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"MGI-QingDao, BGI-Shenzhen, Qingdao, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102982290","display_name":"Jian Liu","orcid":"https://orcid.org/0000-0002-6048-9333"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Liu","raw_affiliation_strings":["MGI, BGI-Shenzhen, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"MGI, BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004969934","display_name":"Huanming Yang","orcid":"https://orcid.org/0000-0002-0858-3410"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanming Yang","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074951825","display_name":"Feng Mu","orcid":"https://orcid.org/0000-0002-0496-4996"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Mu","raw_affiliation_strings":["MGI, BGI-Shenzhen, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"MGI, BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013527651","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0001-9476-4623"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen, China","MGI, BGI-Shenzhen, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"MGI, BGI-Shenzhen, Shenzhen, China","institution_ids":["https://openalex.org/I100135526"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5083408391"],"corresponding_institution_ids":["https://openalex.org/I100135526","https://openalex.org/I124055696"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":5.0327,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.96726776,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"4","issue":"8","first_page":"696","last_page":"709"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.7173718214035034},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5274679660797119},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3664681911468506},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.3237510323524475},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.25955265760421753},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2229982614517212},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.2107401192188263},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.18039709329605103},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.044146060943603516}],"concepts":[{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.7173718214035034},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5274679660797119},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3664681911468506},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.3237510323524475},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.25955265760421753},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2229982614517212},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.2107401192188263},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.18039709329605103},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.044146060943603516}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1038/s42256-022-00518-z","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-022-00518-z","pdf_url":"https://www.nature.com/articles/s42256-022-00518-z.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/8ad7249f-25b3-48e6-b407-02d801ae22ee","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/8ad7249f-25b3-48e6-b407-02d801ae22ee","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Yang , M , Yang , Y , Xie , C , Ni , M , Liu , J , Yang , H , Mu , F & Wang , J 2022 , ' Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale ' , Nature Machine Intelligence , vol. 4 , no. 8 , pp. 696-709 . https://doi.org/10.1038/s42256-022-00518-z","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s42256-022-00518-z","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-022-00518-z","pdf_url":"https://www.nature.com/articles/s42256-022-00518-z.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6700000166893005}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293237882.pdf","grobid_xml":"https://content.openalex.org/works/W4293237882.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W2069089843","https://openalex.org/W2128728535","https://openalex.org/W2135937351","https://openalex.org/W2470673105","https://openalex.org/W2472063172","https://openalex.org/W2523369352","https://openalex.org/W2523620612","https://openalex.org/W2526262591","https://openalex.org/W2551194178","https://openalex.org/W2766959028","https://openalex.org/W2787017828","https://openalex.org/W2794480084","https://openalex.org/W2794521141","https://openalex.org/W2800392236","https://openalex.org/W2801571860","https://openalex.org/W2897249806","https://openalex.org/W2899190218","https://openalex.org/W2901677030","https://openalex.org/W2905317377","https://openalex.org/W2907514116","https://openalex.org/W2907783748","https://openalex.org/W2937917790","https://openalex.org/W2949067670","https://openalex.org/W2949177718","https://openalex.org/W2949813473","https://openalex.org/W2971653850","https://openalex.org/W2984472267","https://openalex.org/W2998840182","https://openalex.org/W3000145506","https://openalex.org/W3002417351","https://openalex.org/W3008278692","https://openalex.org/W3015184839","https://openalex.org/W3021145032","https://openalex.org/W3023456235","https://openalex.org/W3030915969","https://openalex.org/W3031561403","https://openalex.org/W3035160371","https://openalex.org/W3035524453","https://openalex.org/W3037216933","https://openalex.org/W3041129226","https://openalex.org/W3041494167","https://openalex.org/W3043029189","https://openalex.org/W3044388039","https://openalex.org/W3047402958","https://openalex.org/W3080427029","https://openalex.org/W3092982430","https://openalex.org/W3095016916","https://openalex.org/W3106188259","https://openalex.org/W3117464799","https://openalex.org/W3119774682","https://openalex.org/W3121052760","https://openalex.org/W3128058200","https://openalex.org/W3128961456","https://openalex.org/W3129866267","https://openalex.org/W3156636935","https://openalex.org/W3157103618","https://openalex.org/W3159481202","https://openalex.org/W3164692211","https://openalex.org/W3179857518","https://openalex.org/W3196650609","https://openalex.org/W3203654614","https://openalex.org/W3204079698","https://openalex.org/W4225598893","https://openalex.org/W4394202597","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2324878645","https://openalex.org/W4408797289","https://openalex.org/W2139939267","https://openalex.org/W1974511032"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-17T09:09:15.849793","created_date":"2025-10-10T00:00:00"}
