{"id":"https://openalex.org/W4223997639","doi":"https://doi.org/10.1038/s42256-022-00472-w","title":"Microscopy analysis neural network to solve detection, enumeration and segmentation from image-level annotations","display_name":"Microscopy analysis neural network to solve detection, enumeration and segmentation from image-level annotations","publication_year":2022,"publication_date":"2022-04-14","ids":{"openalex":"https://openalex.org/W4223997639","doi":"https://doi.org/10.1038/s42256-022-00472-w"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-022-00472-w","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-022-00472-w","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040560517","display_name":"Anthony Bilodeau","orcid":"https://orcid.org/0000-0002-7041-6402"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anthony Bilodeau","raw_affiliation_strings":["CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","Institute for Intelligence and Data, Qu\u00e9bec, Qu\u00e9bec, Canada"],"raw_orcid":"https://orcid.org/0000-0002-7041-6402","affiliations":[{"raw_affiliation_string":"CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]},{"raw_affiliation_string":"Institute for Intelligence and Data, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088529279","display_name":"Constantin V. L. Delmas","orcid":"https://orcid.org/0000-0002-3135-1116"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Constantin V. L. Delmas","raw_affiliation_strings":["CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada"],"raw_orcid":"https://orcid.org/0000-0002-3135-1116","affiliations":[{"raw_affiliation_string":"CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009849874","display_name":"Martin Parent","orcid":"https://orcid.org/0000-0002-0868-1010"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Martin Parent","raw_affiliation_strings":["CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","Department of Psychiatry and Neuroscience, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Psychiatry and Neuroscience, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I43406934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014197646","display_name":"Paul De Koninck","orcid":"https://orcid.org/0000-0002-6436-1062"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Paul De Koninck","raw_affiliation_strings":["CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","Department of Biochemistry, Microbiology, and Bioinformatics, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Biochemistry, Microbiology, and Bioinformatics, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I43406934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069876930","display_name":"Audrey Durand","orcid":"https://orcid.org/0000-0001-9290-8603"},"institutions":[{"id":"https://openalex.org/I4210108317","display_name":"Ciment Qu\u00e9bec (Canada)","ror":"https://ror.org/01t0hys38","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210108317"]},{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Audrey Durand","raw_affiliation_strings":["CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","Canada CIFAR AI Chair, Qu\u00e9bec,  Qu\u00e9bec, Canada","Department of Computer Science and Software Engineering, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","Department of Electrical and Computer Engineering, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","Institute for Intelligence and Data, Qu\u00e9bec, Qu\u00e9bec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]},{"raw_affiliation_string":"Canada CIFAR AI Chair, Qu\u00e9bec,  Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210108317"]},{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Institute for Intelligence and Data, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052072799","display_name":"Flavie Lavoie\u2010Cardinal","orcid":"https://orcid.org/0000-0002-4496-5088"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Flavie Lavoie-Cardinal","raw_affiliation_strings":["CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","Department of Psychiatry and Neuroscience, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","Institute for Intelligence and Data, Qu\u00e9bec, Qu\u00e9bec, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4496-5088","affiliations":[{"raw_affiliation_string":"CERVO Brain Research Center, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Psychiatry and Neuroscience, Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Institute for Intelligence and Data, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5052072799"],"corresponding_institution_ids":["https://openalex.org/I43406934"],"apc_list":{"value":11690,"currency":"USD","value_usd":11690},"apc_paid":null,"fwci":6.5734,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.96585289,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"4","issue":"5","first_page":"455","last_page":"466"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8016214370727539},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7230660319328308},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6742991209030151},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6554843783378601},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5785453915596008},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5740841627120972},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5503125786781311},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5060047507286072},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4781721234321594},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.4122558534145355},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34534502029418945}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8016214370727539},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7230660319328308},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6742991209030151},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6554843783378601},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5785453915596008},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5740841627120972},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5503125786781311},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5060047507286072},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4781721234321594},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.4122558534145355},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34534502029418945},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-022-00472-w","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-022-00472-w","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3001326695","display_name":"Initiatives internationales - projets \u2014 Neurosciences, sant\u00e9 mentale et toxicomanies","funder_award_id":"295823","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G3578269560","display_name":null,"funder_award_id":"153107","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6588468006","display_name":null,"funder_award_id":"CRC-2019-00126","funder_id":"https://openalex.org/F4320320994","funder_display_name":"Canada Research Chairs"},{"id":"https://openalex.org/G7042372511","display_name":null,"funder_award_id":"470155","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334618","display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9","ror":"https://ror.org/02eqrsj93"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1536680647","https://openalex.org/W1861492603","https://openalex.org/W1901129140","https://openalex.org/W1970480709","https://openalex.org/W1993433125","https://openalex.org/W2007077740","https://openalex.org/W2015159529","https://openalex.org/W2019062120","https://openalex.org/W2023949937","https://openalex.org/W2026581312","https://openalex.org/W2065490663","https://openalex.org/W2071128523","https://openalex.org/W2080878189","https://openalex.org/W2112796928","https://openalex.org/W2119278045","https://openalex.org/W2133059825","https://openalex.org/W2153935912","https://openalex.org/W2167878392","https://openalex.org/W2221898772","https://openalex.org/W2222512263","https://openalex.org/W2269649163","https://openalex.org/W2396622801","https://openalex.org/W2552414813","https://openalex.org/W2758694956","https://openalex.org/W2775469102","https://openalex.org/W2797749376","https://openalex.org/W2804460770","https://openalex.org/W2805605684","https://openalex.org/W2887114371","https://openalex.org/W2891253216","https://openalex.org/W2899867782","https://openalex.org/W2900936384","https://openalex.org/W2903629831","https://openalex.org/W2910683834","https://openalex.org/W2913340405","https://openalex.org/W2914570111","https://openalex.org/W2919115771","https://openalex.org/W2946901414","https://openalex.org/W2950501364","https://openalex.org/W2961912654","https://openalex.org/W2962858109","https://openalex.org/W2963150697","https://openalex.org/W2963712920","https://openalex.org/W2964317695","https://openalex.org/W2970971581","https://openalex.org/W2972892520","https://openalex.org/W2974825848","https://openalex.org/W2975634117","https://openalex.org/W2980998394","https://openalex.org/W2991083105","https://openalex.org/W2991391304","https://openalex.org/W3040525591","https://openalex.org/W3040727891","https://openalex.org/W3043538473","https://openalex.org/W3048399453","https://openalex.org/W3110320917","https://openalex.org/W3111521801","https://openalex.org/W3150581040","https://openalex.org/W3200172539"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W4405124681","https://openalex.org/W1533177136","https://openalex.org/W4380994516"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
