{"id":"https://openalex.org/W4226165034","doi":"https://doi.org/10.1038/s42256-022-00471-x","title":"Deep learning-inferred multiplex immunofluorescence for immunohistochemical image quantification","display_name":"Deep learning-inferred multiplex immunofluorescence for immunohistochemical image quantification","publication_year":2022,"publication_date":"2022-04-07","ids":{"openalex":"https://openalex.org/W4226165034","doi":"https://doi.org/10.1038/s42256-022-00471-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/36118303"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-022-00471-x","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-022-00471-x","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9477216","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045952872","display_name":"Parmida Ghahremani","orcid":"https://orcid.org/0000-0002-6935-817X"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parmida Ghahremani","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027879662","display_name":"Yanyun Li","orcid":"https://orcid.org/0000-0003-2663-4629"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanyun Li","raw_affiliation_strings":["Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039517392","display_name":"Arie Kaufman","orcid":"https://orcid.org/0000-0002-0796-6196"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arie Kaufman","raw_affiliation_strings":["Department of Computer Science, Stony Brook University, Stony Brook, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook, NY, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086378073","display_name":"R. Vanguri","orcid":"https://orcid.org/0000-0001-8049-4829"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rami Vanguri","raw_affiliation_strings":["Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062284140","display_name":"Noah F. Greenwald","orcid":"https://orcid.org/0000-0002-7836-4379"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noah Greenwald","raw_affiliation_strings":["Department of Pathology, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003323350","display_name":"Michael Angelo","orcid":"https://orcid.org/0000-0003-1531-5067"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Angelo","raw_affiliation_strings":["Department of Pathology, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052396441","display_name":"Travis J. Hollmann","orcid":"https://orcid.org/0000-0003-1599-0433"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Travis J. Hollmann","raw_affiliation_strings":["Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089881940","display_name":"Saad Nadeem","orcid":"https://orcid.org/0000-0001-5030-9792"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Saad Nadeem","raw_affiliation_strings":["Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, USA","institution_ids":["https://openalex.org/I1334819555"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5089881940"],"corresponding_institution_ids":["https://openalex.org/I1334819555"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":16.2405,"has_fulltext":false,"cited_by_count":129,"citation_normalized_percentile":{"value":0.99321473,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"4","issue":"4","first_page":"401","last_page":"412"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immunohistochemistry","display_name":"Immunohistochemistry","score":0.7909539937973022},{"id":"https://openalex.org/keywords/multiplex","display_name":"Multiplex","score":0.7514978647232056},{"id":"https://openalex.org/keywords/immunofluorescence","display_name":"Immunofluorescence","score":0.5736023783683777},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.5695505738258362},{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.5670375227928162},{"id":"https://openalex.org/keywords/stain","display_name":"Stain","score":0.5612347722053528},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5001685619354248},{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.43619608879089355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4302803874015808},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.39754000306129456},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25306758284568787},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15939098596572876},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.1384809911251068},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.10476264357566833},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.08275049924850464}],"concepts":[{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.7909539937973022},{"id":"https://openalex.org/C2781188995","wikidata":"https://www.wikidata.org/wiki/Q6934982","display_name":"Multiplex","level":2,"score":0.7514978647232056},{"id":"https://openalex.org/C2778236600","wikidata":"https://www.wikidata.org/wiki/Q592324","display_name":"Immunofluorescence","level":3,"score":0.5736023783683777},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.5695505738258362},{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.5670375227928162},{"id":"https://openalex.org/C2781294515","wikidata":"https://www.wikidata.org/wiki/Q2733470","display_name":"Stain","level":3,"score":0.5612347722053528},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5001685619354248},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.43619608879089355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4302803874015808},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.39754000306129456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25306758284568787},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15939098596572876},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.1384809911251068},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.10476264357566833},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.08275049924850464}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1038/s42256-022-00471-x","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-022-00471-x","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:36118303","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36118303","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9477216","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9477216","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},{"id":"pmh:oai:zenodo.org:4751737","is_oa":true,"landing_page_url":"https://zenodo.org/record/4751737","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Machine Intelligence 4(4) 401-412","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9477216","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9477216","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G6070489562","display_name":null,"funder_award_id":"P30 CA008748","funder_id":"https://openalex.org/F4320309468","funder_display_name":"Memorial Sloan-Kettering Cancer Center"}],"funders":[{"id":"https://openalex.org/F4320309468","display_name":"Memorial Sloan-Kettering Cancer Center","ror":"https://ror.org/02yrq0923"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1536680647","https://openalex.org/W1901129140","https://openalex.org/W2312404985","https://openalex.org/W2343160907","https://openalex.org/W2344264365","https://openalex.org/W2347064614","https://openalex.org/W2592905743","https://openalex.org/W2735039185","https://openalex.org/W2884436604","https://openalex.org/W2913340405","https://openalex.org/W2961686530","https://openalex.org/W2963073614","https://openalex.org/W2963150697","https://openalex.org/W2963869863","https://openalex.org/W2969657290","https://openalex.org/W3001478581","https://openalex.org/W3014974815","https://openalex.org/W3015450039","https://openalex.org/W3017374234","https://openalex.org/W3026766084","https://openalex.org/W3027725947","https://openalex.org/W3034457289","https://openalex.org/W3040784645","https://openalex.org/W3046129945","https://openalex.org/W3080929542","https://openalex.org/W3084493749","https://openalex.org/W3091692930","https://openalex.org/W3093095586","https://openalex.org/W3095316811","https://openalex.org/W3105636206","https://openalex.org/W3112701542","https://openalex.org/W3124025267","https://openalex.org/W3155775787","https://openalex.org/W3162970443","https://openalex.org/W3191728126"],"related_works":["https://openalex.org/W1705932695","https://openalex.org/W90289501","https://openalex.org/W2040366372","https://openalex.org/W2043390473","https://openalex.org/W2336199709","https://openalex.org/W3040343047","https://openalex.org/W4395071213","https://openalex.org/W2362126043","https://openalex.org/W2352791572","https://openalex.org/W2097952607"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":40},{"year":2024,"cited_by_count":39},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
