{"id":"https://openalex.org/W4200166788","doi":"https://doi.org/10.1038/s42256-021-00419-7","title":"Protein function prediction for newly sequenced organisms","display_name":"Protein function prediction for newly sequenced organisms","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4200166788","doi":"https://doi.org/10.1038/s42256-021-00419-7"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-021-00419-7","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00419-7","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070304844","display_name":"Mateo Torres","orcid":"https://orcid.org/0000-0002-9796-1742"},"institutions":[{"id":"https://openalex.org/I44202434","display_name":"Funda\u00e7\u00e3o Getulio Vargas","ror":"https://ror.org/01evzkn27","country_code":"BR","type":"education","lineage":["https://openalex.org/I44202434"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Mateo Torres","raw_affiliation_strings":["Escola de Matem\u00e1tica Aplicada, Funda\u00e7\u00e3o Getulio Vargas, Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-9796-1742","affiliations":[{"raw_affiliation_string":"Escola de Matem\u00e1tica Aplicada, Funda\u00e7\u00e3o Getulio Vargas, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I44202434"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090395493","display_name":"Haixuan Yang","orcid":"https://orcid.org/0000-0002-8724-4192"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Haixuan Yang","raw_affiliation_strings":["School of Mathematics and Statistical Sciences, National University of Ireland Galway, Galway, Ireland"],"raw_orcid":"https://orcid.org/0000-0002-8724-4192","affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistical Sciences, National University of Ireland Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000459620","display_name":"Alfonso E. Romero","orcid":"https://orcid.org/0000-0001-8855-5569"},"institutions":[{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alfonso E. Romero","raw_affiliation_strings":["Department of Computer Science, Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, UK"],"raw_orcid":"https://orcid.org/0000-0001-8855-5569","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, UK","institution_ids":["https://openalex.org/I184558857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030607460","display_name":"Alberto Paccanaro","orcid":"https://orcid.org/0000-0001-8059-1346"},"institutions":[{"id":"https://openalex.org/I184558857","display_name":"Royal Holloway University of London","ror":"https://ror.org/04g2vpn86","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I184558857"]},{"id":"https://openalex.org/I44202434","display_name":"Funda\u00e7\u00e3o Getulio Vargas","ror":"https://ror.org/01evzkn27","country_code":"BR","type":"education","lineage":["https://openalex.org/I44202434"]}],"countries":["BR","GB"],"is_corresponding":true,"raw_author_name":"Alberto Paccanaro","raw_affiliation_strings":["Department of Computer Science, Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, UK","Escola de Matem\u00e1tica Aplicada, Funda\u00e7\u00e3o Getulio Vargas, Rio de Janeiro, Brazil"],"raw_orcid":"https://orcid.org/0000-0001-8059-1346","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, UK","institution_ids":["https://openalex.org/I184558857"]},{"raw_affiliation_string":"Escola de Matem\u00e1tica Aplicada, Funda\u00e7\u00e3o Getulio Vargas, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I44202434"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030607460"],"corresponding_institution_ids":["https://openalex.org/I184558857","https://openalex.org/I44202434"],"apc_list":{"value":11690,"currency":"USD","value_usd":11690},"apc_paid":null,"fwci":1.7024,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.8509915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"3","issue":"12","first_page":"1050","last_page":"1060"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.6167514324188232},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5820479989051819},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5697153806686401},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5593516230583191},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.5146089792251587},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5052757859230042},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.47188106179237366},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4621025323867798},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.41212207078933716},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.36088114976882935},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33045199513435364},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22539514303207397},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21405985951423645},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17538684606552124}],"concepts":[{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.6167514324188232},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5820479989051819},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5697153806686401},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5593516230583191},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.5146089792251587},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5052757859230042},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.47188106179237366},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4621025323867798},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.41212207078933716},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.36088114976882935},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33045199513435364},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22539514303207397},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21405985951423645},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17538684606552124},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-021-00419-7","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00419-7","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.46000000834465027,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1683500639","display_name":null,"funder_award_id":"BB/K004131/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3571901485","display_name":null,"funder_award_id":"BB/F00964X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6294885542","display_name":null,"funder_award_id":"BB/M025047/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6631104955","display_name":null,"funder_award_id":"MR/T001070/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1990223774","https://openalex.org/W2079818352","https://openalex.org/W2099862356","https://openalex.org/W2103017472","https://openalex.org/W2108984616","https://openalex.org/W2124649441","https://openalex.org/W2136316164","https://openalex.org/W2156386646","https://openalex.org/W2164813401","https://openalex.org/W2227395312","https://openalex.org/W2239178919","https://openalex.org/W2535702297","https://openalex.org/W2624021832","https://openalex.org/W2754307534","https://openalex.org/W2900359059","https://openalex.org/W2900569176","https://openalex.org/W2951282333","https://openalex.org/W2951731136","https://openalex.org/W2963409789","https://openalex.org/W2989608901","https://openalex.org/W3094863549","https://openalex.org/W3136918052","https://openalex.org/W4236358448","https://openalex.org/W4393656887","https://openalex.org/W6912635797"],"related_works":["https://openalex.org/W2094822546","https://openalex.org/W4388708026","https://openalex.org/W1969080446","https://openalex.org/W3108941781","https://openalex.org/W1578069856","https://openalex.org/W2134206588","https://openalex.org/W2084200259","https://openalex.org/W2065993463","https://openalex.org/W2401071219","https://openalex.org/W2554237979"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
