{"id":"https://openalex.org/W3211434666","doi":"https://doi.org/10.1038/s42256-021-00413-z","title":"The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires","display_name":"The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires","publication_year":2021,"publication_date":"2021-11-16","ids":{"openalex":"https://openalex.org/W3211434666","doi":"https://doi.org/10.1038/s42256-021-00413-z","mag":"3211434666","pmid":"https://pubmed.ncbi.nlm.nih.gov/37396030"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-021-00413-z","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-021-00413-z","pdf_url":"https://www.nature.com/articles/s42256-021-00413-z.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.nature.com/articles/s42256-021-00413-z.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037853098","display_name":"Milena Pavlovi\u0107","orcid":"https://orcid.org/0000-0002-2484-3868"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Milena Pavlovi\u0107","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088612281","display_name":"Lonneke Scheffer","orcid":"https://orcid.org/0000-0001-8900-075X"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lonneke Scheffer","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011141535","display_name":"Keshav Motwani","orcid":"https://orcid.org/0000-0003-1457-2731"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keshav Motwani","raw_affiliation_strings":["Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, USA","Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000683046","display_name":"Chakravarthi Kanduri","orcid":"https://orcid.org/0000-0002-4783-9060"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Chakravarthi Kanduri","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030041755","display_name":"Radmila Kompova","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Radmila Kompova","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016397070","display_name":"Nikolay Vazov","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Nikolay Vazov","raw_affiliation_strings":["University Center for Information Technology, University of Oslo, Norway","University Center for Information Technology, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"University Center for Information Technology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"University Center for Information Technology, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090370237","display_name":"Knut Waagan","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Knut Waagan","raw_affiliation_strings":["University Center for Information Technology, University of Oslo, Norway","University Center for Information Technology, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"University Center for Information Technology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"University Center for Information Technology, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064871123","display_name":"Fabian L. M. Bernal","orcid":"https://orcid.org/0000-0003-1212-5700"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Fabian L. M. Bernal","raw_affiliation_strings":["University Center for Information Technology, University of Oslo, Norway","University Center for Information Technology, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"University Center for Information Technology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"University Center for Information Technology, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112184633","display_name":"Alexandre Almeida da Costa","orcid":null},"institutions":[{"id":"https://openalex.org/I4210166615","display_name":"INESC TEC","ror":"https://ror.org/05fa8ka61","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590","https://openalex.org/I4210166615"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Alexandre Almeida Costa","raw_affiliation_strings":["Institute for Systems and Computer Engineering, Technology and Science, Portugal","Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal"],"affiliations":[{"raw_affiliation_string":"Institute for Systems and Computer Engineering, Technology and Science, Portugal","institution_ids":["https://openalex.org/I4210166615"]},{"raw_affiliation_string":"Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal","institution_ids":["https://openalex.org/I4210166615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036616875","display_name":"Brian Corrie","orcid":"https://orcid.org/0000-0003-3888-6495"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Brian Corrie","raw_affiliation_strings":["Biological Sciences, Simon Fraser University, Canada","Biological Sciences, Simon Fraser University, Burnaby, Canada"],"affiliations":[{"raw_affiliation_string":"Biological Sciences, Simon Fraser University, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Biological Sciences, Simon Fraser University, Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017929614","display_name":"Rahmad Akbar","orcid":"https://orcid.org/0000-0002-6692-0876"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Rahmad Akbar","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069724737","display_name":"Ghadi S. Al Hajj","orcid":"https://orcid.org/0000-0003-1639-1424"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ghadi S. Al Hajj","raw_affiliation_strings":["Department of Informatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048362259","display_name":"Gabriel Balaban","orcid":"https://orcid.org/0000-0002-6794-9611"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Gabriel Balaban","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047782710","display_name":"Todd M. Brusko","orcid":"https://orcid.org/0000-0003-2878-9296"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Todd M. Brusko","raw_affiliation_strings":["Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, USA","Department of Pediatrics, College of Medicine, University of Florida Diabetes Institute, USA","Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, USA","Department of Pediatrics, College of Medicine, University of Florida Diabetes Institute, Gainesville, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, University of Florida Diabetes Institute, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Pathology, Immunology and Laboratory Medicine, College of Medicine, University of Florida Diabetes Institute, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, University of Florida Diabetes Institute, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069976250","display_name":"Maria Chernigovskaya","orcid":"https://orcid.org/0000-0002-1507-4171"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Maria Chernigovskaya","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078078996","display_name":"Scott Christley","orcid":"https://orcid.org/0000-0002-9889-1221"},"institutions":[{"id":"https://openalex.org/I4210096815","display_name":"Southwestern Medical Center","ror":"https://ror.org/00t9vx427","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096815"]},{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott Christley","raw_affiliation_strings":["Department of Population and Data Sciences, UT Southwestern Medical Center, USA","Department of Population and Data Sciences, UT Southwestern Medical Center, Lawton, USA"],"affiliations":[{"raw_affiliation_string":"Department of Population and Data Sciences, UT Southwestern Medical Center, USA","institution_ids":["https://openalex.org/I867280407","https://openalex.org/I4210096815","https://openalex.org/I4388891891"]},{"raw_affiliation_string":"Department of Population and Data Sciences, UT Southwestern Medical Center, Lawton, USA","institution_ids":["https://openalex.org/I867280407","https://openalex.org/I4210096815","https://openalex.org/I4388891891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090203652","display_name":"Lindsay G. Cowell","orcid":"https://orcid.org/0000-0003-1617-8244"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lindsay G. Cowell","raw_affiliation_strings":["Department of Mathematics, University of Oslo, Norway","Department of Mathematics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063811520","display_name":"Robert Frank","orcid":"https://orcid.org/0000-0001-9097-7963"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Robert Frank","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055428069","display_name":"Ivar Grytten","orcid":"https://orcid.org/0000-0001-8941-942X"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ivar Grytten","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014990782","display_name":"Sveinung Gundersen","orcid":"https://orcid.org/0000-0001-9888-7954"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Sveinung Gundersen","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011273156","display_name":"Ingrid Hob\u00e6k Haff","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ingrid Hob\u00e6k Haff","raw_affiliation_strings":["Department of Mathematics, University of Oslo, Norway","Department of Mathematics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083493986","display_name":"Eivind Hovig","orcid":"https://orcid.org/0000-0002-9103-1077"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eivind Hovig","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway","Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Norway","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009249253","display_name":"Ping\u2010Han Hsieh","orcid":"https://orcid.org/0000-0003-3054-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I2802079931","display_name":"Nord University","ror":"https://ror.org/030mwrt98","country_code":"NO","type":"education","lineage":["https://openalex.org/I2802079931"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ping-Han Hsieh","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Norway","Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Norway","institution_ids":["https://openalex.org/I2802079931","https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079632405","display_name":"G\u00fcnter Klambauer","orcid":"https://orcid.org/0000-0003-2861-5552"},"institutions":[{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"G\u00fcnter Klambauer","raw_affiliation_strings":["ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Austria","ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria"],"affiliations":[{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Austria","institution_ids":["https://openalex.org/I121883995"]},{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria","institution_ids":["https://openalex.org/I121883995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081799863","display_name":"Marieke L. Kuijjer","orcid":"https://orcid.org/0000-0001-6280-3130"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]},{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I2802079931","display_name":"Nord University","ror":"https://ror.org/030mwrt98","country_code":"NO","type":"education","lineage":["https://openalex.org/I2802079931"]}],"countries":["NL","NO"],"is_corresponding":false,"raw_author_name":"Marieke L. Kuijjer","raw_affiliation_strings":["Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Norway","Department of Pathology, Leiden University Medical Center, the Netherlands","Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway","Department of Pathology, Leiden University Medical Center, Leiden, the Netherlands"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Norway","institution_ids":["https://openalex.org/I2802079931","https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Pathology, Leiden University Medical Center, the Netherlands","institution_ids":["https://openalex.org/I2800006345"]},{"raw_affiliation_string":"Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Pathology, Leiden University Medical Center, Leiden, the Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001937942","display_name":"Christin Lund\u2010Andersen","orcid":"https://orcid.org/0000-0002-7277-6612"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Christin Lund-Andersen","raw_affiliation_strings":["Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Norway","Faculty of Medicine, Institute of Clinical Medicine, University of Oslo, Norway","Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Oslo, Norway","Faculty of Medicine, Institute of Clinical Medicine, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Norway","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Faculty of Medicine, Institute of Clinical Medicine, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, Oslo University Hospital, The Norwegian Radium Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175"]},{"raw_affiliation_string":"Faculty of Medicine, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079314377","display_name":"Antonio Martini","orcid":"https://orcid.org/0000-0002-0669-8687"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Antonio Martini","raw_affiliation_strings":["Department of Informatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038796826","display_name":"Thomas Minotto","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Thomas Minotto","raw_affiliation_strings":["Department of Mathematics, University of Oslo, Norway","Department of Mathematics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046161876","display_name":"Johan Pensar","orcid":"https://orcid.org/0000-0002-5158-5761"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Johan Pensar","raw_affiliation_strings":["Department of Mathematics, University of Oslo, Norway","Department of Mathematics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Mathematics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035654730","display_name":"Knut Dagestad Rand","orcid":"https://orcid.org/0000-0003-3359-7619"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Knut Rand","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026669029","display_name":"Enrico Riccardi","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Enrico Riccardi","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000751357","display_name":"Philippe A. Robert","orcid":"https://orcid.org/0000-0003-1345-5015"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Philippe A. Robert","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089030744","display_name":"Artur Rocha","orcid":"https://orcid.org/0000-0002-5637-1041"},"institutions":[{"id":"https://openalex.org/I4210166615","display_name":"INESC TEC","ror":"https://ror.org/05fa8ka61","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590","https://openalex.org/I4210166615"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Artur Rocha","raw_affiliation_strings":["Institute for Systems and Computer Engineering, Technology and Science, Portugal","Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal"],"affiliations":[{"raw_affiliation_string":"Institute for Systems and Computer Engineering, Technology and Science, Portugal","institution_ids":["https://openalex.org/I4210166615"]},{"raw_affiliation_string":"Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal","institution_ids":["https://openalex.org/I4210166615"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078710067","display_name":"Andrei Slabodkin","orcid":"https://orcid.org/0000-0002-9320-1666"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Andrei Slabodkin","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031331381","display_name":"Igor Snapkov","orcid":"https://orcid.org/0000-0001-5341-685X"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Igor Snapkov","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081876747","display_name":"Ludvig M. Sollid","orcid":"https://orcid.org/0000-0001-8860-704X"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ludvig M. Sollid","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089008371","display_name":"Dmytro Titov","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Dmytro Titov","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053602616","display_name":"C\u00e9dric R. Weber","orcid":"https://orcid.org/0000-0003-4802-8996"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"C\u00e9dric R. Weber","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Switzerland","Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019119934","display_name":"Michael Widrich","orcid":"https://orcid.org/0000-0002-5721-0135"},"institutions":[{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Michael Widrich","raw_affiliation_strings":["ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Austria","ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria"],"affiliations":[{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Austria","institution_ids":["https://openalex.org/I121883995"]},{"raw_affiliation_string":"ELLIS Unit Linz and LIT AI Lab, Institute for Machine Learning, Johannes Kepler University Linz, Linz, Austria","institution_ids":["https://openalex.org/I121883995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084475280","display_name":"Gur Yaari","orcid":"https://orcid.org/0000-0001-9311-9884"},"institutions":[{"id":"https://openalex.org/I13955877","display_name":"Bar-Ilan University","ror":"https://ror.org/03kgsv495","country_code":"IL","type":"education","lineage":["https://openalex.org/I13955877"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Gur Yaari","raw_affiliation_strings":["Faculty of Engineering, Bar Ilan University, Israel","Faculty of Engineering, Bar Ilan University, Ramat Gan, Israel"],"affiliations":[{"raw_affiliation_string":"Faculty of Engineering, Bar Ilan University, Israel","institution_ids":["https://openalex.org/I13955877"]},{"raw_affiliation_string":"Faculty of Engineering, Bar Ilan University, Ramat Gan, Israel","institution_ids":["https://openalex.org/I13955877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089158926","display_name":"Victor Greiff","orcid":"https://orcid.org/0000-0003-2622-5032"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Victor Greiff","raw_affiliation_strings":["Department of Immunology, University of Oslo, Norway","Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Immunology, University of Oslo and Oslo University Hospital, Oslo, Norway","institution_ids":["https://openalex.org/I1281400175","https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054500587","display_name":"Geir Kjetil Sandve","orcid":"https://orcid.org/0000-0002-4959-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Geir Kjetil Sandve","raw_affiliation_strings":["Centre for Bioinformatics, University of Oslo, Norway","Department of Informatics, University of Oslo, Norway","K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","Centre for Bioinformatics, University of Oslo, Oslo, Norway","Department of Informatics, University of Oslo, Oslo, Norway"],"affiliations":[{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"K.G. Jebsen Centre for Coeliac Disease Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Centre for Bioinformatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":8,"institutions_distinct_count":42,"corresponding_author_ids":["https://openalex.org/A5054500587"],"corresponding_institution_ids":["https://openalex.org/I184942183"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":{"value":9750,"currency":"EUR","value_usd":11690},"fwci":5.0418,"has_fulltext":true,"cited_by_count":85,"citation_normalized_percentile":{"value":0.96734569,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"3","issue":"11","first_page":"936","last_page":"944"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6782954931259155},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.6136967539787292},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5758875608444214},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.5735967755317688},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.49291300773620605},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4343258738517761},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3505290746688843},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33597779273986816},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3279606103897095},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14861741662025452},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11172354221343994}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6782954931259155},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.6136967539787292},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5758875608444214},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.5735967755317688},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.49291300773620605},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4343258738517761},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3505290746688843},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33597779273986816},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3279606103897095},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14861741662025452},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11172354221343994},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1038/s42256-021-00413-z","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-021-00413-z","pdf_url":"https://www.nature.com/articles/s42256-021-00413-z.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:37396030","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37396030","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10312379","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10312379","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10312379/pdf/nihms-1845306.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},{"id":"pmh:oai:www.duo.uio.no:10852/107194","is_oa":false,"landing_page_url":"http://hdl.handle.net/10852/107194","pdf_url":null,"source":{"id":"https://openalex.org/S4306401717","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Doctoral thesis"}],"best_oa_location":{"id":"doi:10.1038/s42256-021-00413-z","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42256-021-00413-z","pdf_url":"https://www.nature.com/articles/s42256-021-00413-z.pdf","source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G3689278683","display_name":null,"funder_award_id":"P01 AI042288","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3691090591","display_name":null,"funder_award_id":"FRIPRO","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G3748656914","display_name":null,"funder_award_id":"Norway","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G4530412850","display_name":null,"funder_award_id":"2019PG-T1D011","funder_id":"https://openalex.org/F4320309446","funder_display_name":"Leona M. and Harry B. Helmsley Charitable Trust"},{"id":"https://openalex.org/G512131340","display_name":null,"funder_award_id":"311341","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G7002074878","display_name":null,"funder_award_id":"UG3 DK122638","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7694509137","display_name":null,"funder_award_id":"300740","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G976221074","display_name":null,"funder_award_id":"DK122638","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309446","display_name":"Leona M. and Harry B. Helmsley Charitable Trust","ror":"https://ror.org/011x6n313"},{"id":"https://openalex.org/F4320310082","display_name":"Stiftelsen Kristian Gerhard Jebsen","ror":"https://ror.org/021g6tq38"},{"id":"https://openalex.org/F4320317895","display_name":"Illinois Nutrient Research and Education Council","ror":null},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3211434666.pdf","grobid_xml":"https://content.openalex.org/works/W3211434666.grobid-xml"},"referenced_works_count":95,"referenced_works":["https://openalex.org/W1483854882","https://openalex.org/W1710644225","https://openalex.org/W1993928780","https://openalex.org/W2018339091","https://openalex.org/W2089041106","https://openalex.org/W2095736835","https://openalex.org/W2101234009","https://openalex.org/W2113392525","https://openalex.org/W2127090731","https://openalex.org/W2130479394","https://openalex.org/W2132983397","https://openalex.org/W2137890831","https://openalex.org/W2138517340","https://openalex.org/W2141312574","https://openalex.org/W2151558930","https://openalex.org/W2159675211","https://openalex.org/W2175702062","https://openalex.org/W2414283705","https://openalex.org/W2466989778","https://openalex.org/W2523044687","https://openalex.org/W2594183968","https://openalex.org/W2605177850","https://openalex.org/W2607237575","https://openalex.org/W2612354780","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2766414528","https://openalex.org/W2768618120","https://openalex.org/W2792573580","https://openalex.org/W2806868583","https://openalex.org/W2808291175","https://openalex.org/W2811364409","https://openalex.org/W2890028650","https://openalex.org/W2892221324","https://openalex.org/W2893410333","https://openalex.org/W2905810301","https://openalex.org/W2909634875","https://openalex.org/W2910384850","https://openalex.org/W2917207851","https://openalex.org/W2922979017","https://openalex.org/W2926687552","https://openalex.org/W2935703330","https://openalex.org/W2937307539","https://openalex.org/W2946830989","https://openalex.org/W2947763854","https://openalex.org/W2950612260","https://openalex.org/W2951124440","https://openalex.org/W2951506174","https://openalex.org/W2951959160","https://openalex.org/W2953384591","https://openalex.org/W2963752224","https://openalex.org/W2971575097","https://openalex.org/W2979330275","https://openalex.org/W2984152148","https://openalex.org/W3007865917","https://openalex.org/W3011885318","https://openalex.org/W3020331344","https://openalex.org/W3022788428","https://openalex.org/W3029868869","https://openalex.org/W3041325230","https://openalex.org/W3044470192","https://openalex.org/W3047127476","https://openalex.org/W3048782167","https://openalex.org/W3049464942","https://openalex.org/W3063526921","https://openalex.org/W3080758869","https://openalex.org/W3081796264","https://openalex.org/W3083225904","https://openalex.org/W3087255036","https://openalex.org/W3092435225","https://openalex.org/W3095930322","https://openalex.org/W3100486620","https://openalex.org/W3101138461","https://openalex.org/W3102596196","https://openalex.org/W3102656235","https://openalex.org/W3113525558","https://openalex.org/W3114114175","https://openalex.org/W3121050787","https://openalex.org/W3125782153","https://openalex.org/W3135351475","https://openalex.org/W3138156743","https://openalex.org/W3138783506","https://openalex.org/W3139321392","https://openalex.org/W3143916713","https://openalex.org/W3156522942","https://openalex.org/W3159843138","https://openalex.org/W3210127696","https://openalex.org/W3215202185","https://openalex.org/W4238869027","https://openalex.org/W4250708691","https://openalex.org/W6675354045","https://openalex.org/W6713134421","https://openalex.org/W6884609172","https://openalex.org/W6903372692","https://openalex.org/W6922183638"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2905433371","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W1986582023","https://openalex.org/W2883749686","https://openalex.org/W2966829450","https://openalex.org/W4315864862"],"abstract_inverted_index":{"Adaptive":[0],"immune":[1,18,130],"receptor":[2],"repertoires":[3],"(AIRR)":[4],"are":[5],"key":[6],"targets":[7],"for":[8,37,143],"biomedical":[9],"research":[10],"as":[11,98],"they":[12],"record":[13],"past":[14],"and":[15,40,59,87,102,109,136,147],"ongoing":[16],"adaptive":[17],"responses.":[19],"The":[20],"capacity":[21],"of":[22,47,56,70,112,121,153],"machine":[23],"learning":[24,141],"(ML)":[25],"to":[26],"identify":[27],"complex":[28],"discriminative":[29],"sequence":[30],"patterns":[31],"renders":[32],"it":[33],"an":[34,76,104],"ideal":[35],"approach":[36],"AIRR-based":[38],"diagnostic":[39],"therapeutic":[41],"discovery.":[42],"To":[43,90],"date,":[44],"widespread":[45,92],"adoption":[46],"AIRR":[48,72,154],"ML":[49,73],"has":[50],"been":[51],"inhibited":[52],"by":[53,66,123],"a":[54,99,126,138],"lack":[55],"reproducibility,":[57],"transparency,":[58],"interoperability.":[60],"immuneML":[61,95,122],"(immuneml.uio.no)":[62],"addresses":[63],"these":[64],"concerns":[65],"implementing":[67],"each":[68],"step":[69],"the":[71,118],"process":[74],"in":[75],"extensible,":[77],"open-source":[78],"software":[79],"ecosystem":[80],"that":[81],"is":[82,96,114],"based":[83],"on":[84,129],"fully":[85],"specified":[86],"shareable":[88],"workflows.":[89],"facilitate":[91],"user":[93],"adoption,":[94],"available":[97],"command-line":[100],"tool":[101],"through":[103],"intuitive":[105],"Galaxy":[106],"web":[107],"interface,":[108],"extensive":[110],"documentation":[111],"workflows":[113],"provided.":[115],"We":[116],"demonstrate":[117],"broad":[119],"applicability":[120],"(i)":[124],"reproducing":[125],"large-scale":[127],"study":[128],"state":[131],"prediction,":[132,146],"(ii)":[133],"developing,":[134],"integrating,":[135],"applying":[137],"novel":[139],"deep":[140],"method":[142],"antigen":[144],"specificity":[145],"(iii)":[148],"showcasing":[149],"streamlined":[150],"interpretability-focused":[151],"benchmarking":[152],"ML.":[155]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":5}],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2025-10-10T00:00:00"}
