{"id":"https://openalex.org/W3212417448","doi":"https://doi.org/10.1038/s42256-021-00410-2","title":"A deep generative model for molecule optimization via one fragment modification","display_name":"A deep generative model for molecule optimization via one fragment modification","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W3212417448","doi":"https://doi.org/10.1038/s42256-021-00410-2","mag":"3212417448","pmid":"https://pubmed.ncbi.nlm.nih.gov/35187404"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-021-00410-2","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00410-2","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2012.04231","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100715928","display_name":"Ziqi Chen","orcid":"https://orcid.org/0009-0007-4778-8826"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ziqi Chen","raw_affiliation_strings":["Computer Science and Engineering, The Ohio Sate University, Columbus, OH 43210","Computer Science and Engineering, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, The Ohio Sate University, Columbus, OH 43210","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Computer Science and Engineering, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065576006","display_name":"Martin Renqiang Min","orcid":"https://orcid.org/0000-0002-8563-6133"},"institutions":[{"id":"https://openalex.org/I118347220","display_name":"NEC (Japan)","ror":"https://ror.org/04jndar25","country_code":"JP","type":"company","lineage":["https://openalex.org/I118347220"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Martin Renqiang Min","raw_affiliation_strings":["Machine Learning Department, NEC Labs America, Princeton, NJ 08540","Machine Learning Department, NEC Labs America, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Machine Learning Department, NEC Labs America, Princeton, NJ 08540","institution_ids":["https://openalex.org/I118347220"]},{"raw_affiliation_string":"Machine Learning Department, NEC Labs America, Princeton, NJ, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100755351","display_name":"Srinivasan Parthasarathy","orcid":"https://orcid.org/0000-0002-6062-6449"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinivasan Parthasarathy","raw_affiliation_strings":["Computer Science and Engineering, The Ohio Sate University, Columbus, OH 43210","Translational Data Analytics Institute, The Ohio Sate University, Columbus, OH 43210","Computer Science and Engineering, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, The Ohio Sate University, Columbus, OH 43210","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Translational Data Analytics Institute, The Ohio Sate University, Columbus, OH 43210","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Computer Science and Engineering, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028997621","display_name":"Xia Ning","orcid":"https://orcid.org/0000-0002-6842-1165"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xia Ning","raw_affiliation_strings":["Biomedical Informatics, The Ohio Sate University, Columbus, OH 43210","Computer Science and Engineering, The Ohio Sate University, Columbus, OH 43210","Translational Data Analytics Institute, The Ohio Sate University, Columbus, OH 43210","Translational Data Analytics Institute, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics, The Ohio Sate University, Columbus, OH 43210","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Computer Science and Engineering, The Ohio Sate University, Columbus, OH 43210","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Translational Data Analytics Institute, The Ohio Sate University, Columbus, OH 43210","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Translational Data Analytics Institute, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100715928"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":8.3287,"has_fulltext":false,"cited_by_count":91,"citation_normalized_percentile":{"value":0.98041812,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"3","issue":"12","first_page":"1040","last_page":"1049"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.8051053285598755},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.5310333967208862},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.48476356267929077},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4005776047706604},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3279610574245453},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29363903403282166},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1845897138118744},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12181884050369263}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.8051053285598755},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.5310333967208862},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.48476356267929077},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4005776047706604},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3279610574245453},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29363903403282166},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1845897138118744},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12181884050369263}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1038/s42256-021-00410-2","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00410-2","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:35187404","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35187404","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:arXiv.org:2012.04231","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2012.04231","pdf_url":"https://arxiv.org/pdf/2012.04231","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8856604","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8856604","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2012.04231","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2012.04231","pdf_url":"https://arxiv.org/pdf/2012.04231","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1058203011","display_name":null,"funder_award_id":"IIS-1827472","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G283757684","display_name":null,"funder_award_id":"1R21LM013678-01","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5760881210","display_name":null,"funder_award_id":"1R01LM012605-01A1","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6616138646","display_name":null,"funder_award_id":"OAC-2018627","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7427039554","display_name":null,"funder_award_id":"IIS-2133650","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310598","display_name":"Amazon Web Services","ror":"https://ror.org/04mv4n011"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":87,"referenced_works":["https://openalex.org/W113396932","https://openalex.org/W1757990252","https://openalex.org/W1959608418","https://openalex.org/W1965142824","https://openalex.org/W1981737096","https://openalex.org/W1997188340","https://openalex.org/W2010541316","https://openalex.org/W2016589492","https://openalex.org/W2025006523","https://openalex.org/W2034549041","https://openalex.org/W2046258407","https://openalex.org/W2046813714","https://openalex.org/W2052907531","https://openalex.org/W2061843861","https://openalex.org/W2066273100","https://openalex.org/W2104228245","https://openalex.org/W2125426232","https://openalex.org/W2132022337","https://openalex.org/W2135732933","https://openalex.org/W2142595462","https://openalex.org/W2160592148","https://openalex.org/W2164278908","https://openalex.org/W2169303530","https://openalex.org/W2414693816","https://openalex.org/W2529996553","https://openalex.org/W2558999090","https://openalex.org/W2589279470","https://openalex.org/W2606780347","https://openalex.org/W2610148085","https://openalex.org/W2747592475","https://openalex.org/W2770942678","https://openalex.org/W2785523195","https://openalex.org/W2786722833","https://openalex.org/W2797527950","https://openalex.org/W2797867047","https://openalex.org/W2805177834","https://openalex.org/W2805483395","https://openalex.org/W2883583109","https://openalex.org/W2892221324","https://openalex.org/W2895744665","https://openalex.org/W2915175970","https://openalex.org/W2946838154","https://openalex.org/W2946965984","https://openalex.org/W2947950688","https://openalex.org/W2956961449","https://openalex.org/W2962711740","https://openalex.org/W2962764565","https://openalex.org/W2963028280","https://openalex.org/W2963521729","https://openalex.org/W2963662739","https://openalex.org/W2963676163","https://openalex.org/W2963819570","https://openalex.org/W2966797369","https://openalex.org/W2970365156","https://openalex.org/W2977044154","https://openalex.org/W2980922099","https://openalex.org/W2992072991","https://openalex.org/W2994860160","https://openalex.org/W2996091952","https://openalex.org/W3001935646","https://openalex.org/W3005111505","https://openalex.org/W3006759222","https://openalex.org/W3007309629","https://openalex.org/W3007702560","https://openalex.org/W3014154196","https://openalex.org/W3016820838","https://openalex.org/W3032073576","https://openalex.org/W3035314354","https://openalex.org/W3036527662","https://openalex.org/W3037326711","https://openalex.org/W3040246664","https://openalex.org/W3041381957","https://openalex.org/W3097145107","https://openalex.org/W3098269892","https://openalex.org/W3099414221","https://openalex.org/W3103608360","https://openalex.org/W3104956673","https://openalex.org/W3114693970","https://openalex.org/W3155036100","https://openalex.org/W3177828909","https://openalex.org/W3200409365","https://openalex.org/W3212417448","https://openalex.org/W4242372416","https://openalex.org/W4242836807","https://openalex.org/W4254278957","https://openalex.org/W4292363360","https://openalex.org/W6912427470"],"related_works":["https://openalex.org/W4365211920","https://openalex.org/W3014948380","https://openalex.org/W4380551139","https://openalex.org/W4317695495","https://openalex.org/W4395044357","https://openalex.org/W4287117424","https://openalex.org/W4387506531","https://openalex.org/W2087346071","https://openalex.org/W2967848559","https://openalex.org/W4299831724"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":30},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
