{"id":"https://openalex.org/W3164365580","doi":"https://doi.org/10.1038/s42256-021-00342-x","title":"Segmentation of neurons from fluorescence calcium recordings beyond real time","display_name":"Segmentation of neurons from fluorescence calcium recordings beyond real time","publication_year":2021,"publication_date":"2021-05-20","ids":{"openalex":"https://openalex.org/W3164365580","doi":"https://doi.org/10.1038/s42256-021-00342-x","mag":"3164365580","pmid":"https://pubmed.ncbi.nlm.nih.gov/34485824"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-021-00342-x","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00342-x","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8415119","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027698954","display_name":"Yijun Bao","orcid":"https://orcid.org/0000-0001-9641-9946"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yijun Bao","raw_affiliation_strings":["Department of Biomedical Engineering, Duke University, Durham, NC 27708","Department of Biomedical Engineering, Duke University, Durham, NC, USA"],"raw_orcid":"https://orcid.org/0000-0001-9641-9946","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC 27708","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008773226","display_name":"Somayyeh Soltanian-Zadeh","orcid":"https://orcid.org/0000-0003-2726-8501"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Somayyeh Soltanian-Zadeh","raw_affiliation_strings":["Department of Biomedical Engineering, Duke University, Durham, NC 27708","Department of Biomedical Engineering, Duke University, Durham, NC, USA"],"raw_orcid":"https://orcid.org/0000-0003-2726-8501","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC 27708","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023633559","display_name":"Sina Farsiu","orcid":"https://orcid.org/0000-0003-4872-2902"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sina Farsiu","raw_affiliation_strings":["Department of Biomedical Engineering, Duke University, Durham, NC 27708","Department of Ophthalmology, Duke University Medical Center, Durham, NC 27710, USA","Department of Biomedical Engineering, Duke University, Durham, NC, USA"],"raw_orcid":"https://orcid.org/0000-0003-4872-2902","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC 27708","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Ophthalmology, Duke University Medical Center, Durham, NC 27710, USA","institution_ids":["https://openalex.org/I4210153043","https://openalex.org/I4210126298"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020899383","display_name":"Yiyang Gong","orcid":"https://orcid.org/0000-0002-1855-930X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yiyang Gong","raw_affiliation_strings":["Department of Biomedical Engineering, Duke University, Durham, NC 27708","Department of Neurobiology, Duke University, Durham, NC 27708","Department of Neurobiology, Duke University, Durham, NC, USA"],"raw_orcid":"https://orcid.org/0000-0002-1855-930X","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC 27708","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Neurobiology, Duke University, Durham, NC 27708","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Neurobiology, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5020899383","https://openalex.org/A5027698954"],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":10.6894,"has_fulltext":false,"cited_by_count":62,"citation_normalized_percentile":{"value":0.98248636,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"3","issue":"7","first_page":"590","last_page":"600"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/calcium-imaging","display_name":"Calcium imaging","score":0.7648307085037231},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7444764375686646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.662844181060791},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5255621671676636},{"id":"https://openalex.org/keywords/spike","display_name":"Spike (software development)","score":0.5076969861984253},{"id":"https://openalex.org/keywords/two-photon-excitation-microscopy","display_name":"Two-photon excitation microscopy","score":0.4911046028137207},{"id":"https://openalex.org/keywords/neuron","display_name":"Neuron","score":0.48059818148612976},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.4755142331123352},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.47506898641586304},{"id":"https://openalex.org/keywords/premovement-neuronal-activity","display_name":"Premovement neuronal activity","score":0.4258269667625427},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.42569032311439514},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.4078139662742615},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.39652517437934875},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.35783132910728455},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.33259084820747375},{"id":"https://openalex.org/keywords/calcium","display_name":"Calcium","score":0.2956664562225342},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.211074560880661},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.17248958349227905},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1552124321460724},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.13588514924049377}],"concepts":[{"id":"https://openalex.org/C2776032975","wikidata":"https://www.wikidata.org/wiki/Q5018833","display_name":"Calcium imaging","level":3,"score":0.7648307085037231},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7444764375686646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.662844181060791},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5255621671676636},{"id":"https://openalex.org/C2781390188","wikidata":"https://www.wikidata.org/wiki/Q25203449","display_name":"Spike (software development)","level":2,"score":0.5076969861984253},{"id":"https://openalex.org/C47785574","wikidata":"https://www.wikidata.org/wiki/Q373859","display_name":"Two-photon excitation microscopy","level":3,"score":0.4911046028137207},{"id":"https://openalex.org/C2778794669","wikidata":"https://www.wikidata.org/wiki/Q43054","display_name":"Neuron","level":2,"score":0.48059818148612976},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.4755142331123352},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.47506898641586304},{"id":"https://openalex.org/C74254510","wikidata":"https://www.wikidata.org/wiki/Q7240508","display_name":"Premovement neuronal activity","level":2,"score":0.4258269667625427},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.42569032311439514},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.4078139662742615},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.39652517437934875},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.35783132910728455},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.33259084820747375},{"id":"https://openalex.org/C519063684","wikidata":"https://www.wikidata.org/wiki/Q706","display_name":"Calcium","level":2,"score":0.2956664562225342},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.211074560880661},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17248958349227905},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1552124321460724},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.13588514924049377},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1038/s42256-021-00342-x","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00342-x","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:34485824","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34485824","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8415119","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8415119","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8415119","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8415119","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1247782625","display_name":null,"funder_award_id":"3332147","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6454311284","display_name":null,"funder_award_id":"1DP2-NS111505","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7346290539","display_name":null,"funder_award_id":"1UF1-NS107678","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320306253","display_name":"Arnold and Mabel Beckman Foundation","ror":"https://ror.org/05avmtm72"},{"id":"https://openalex.org/F4320309597","display_name":"Vallee Foundation","ror":"https://ror.org/05nmp3276"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W569478347","https://openalex.org/W1901129140","https://openalex.org/W1982105314","https://openalex.org/W1995360097","https://openalex.org/W1997524269","https://openalex.org/W2010600019","https://openalex.org/W2025818287","https://openalex.org/W2026425363","https://openalex.org/W2057881395","https://openalex.org/W2094045132","https://openalex.org/W2099168648","https://openalex.org/W2122219664","https://openalex.org/W2134797427","https://openalex.org/W2147607085","https://openalex.org/W2160919229","https://openalex.org/W2171332611","https://openalex.org/W2231009150","https://openalex.org/W2294476253","https://openalex.org/W2397643408","https://openalex.org/W2469581795","https://openalex.org/W2469594461","https://openalex.org/W2533800772","https://openalex.org/W2566775857","https://openalex.org/W2610781289","https://openalex.org/W2743961201","https://openalex.org/W2753811918","https://openalex.org/W2793372796","https://openalex.org/W2794648976","https://openalex.org/W2805271873","https://openalex.org/W2900317266","https://openalex.org/W2903926982","https://openalex.org/W2913083484","https://openalex.org/W2936929958","https://openalex.org/W2937274403","https://openalex.org/W2944054712","https://openalex.org/W2950205567","https://openalex.org/W2950849463","https://openalex.org/W2955564464","https://openalex.org/W2962914239","https://openalex.org/W2963351448","https://openalex.org/W2963426458","https://openalex.org/W2963621587","https://openalex.org/W2963717178","https://openalex.org/W2963813662","https://openalex.org/W2969511873","https://openalex.org/W2969541077","https://openalex.org/W2979898055","https://openalex.org/W2994737554","https://openalex.org/W2996476963","https://openalex.org/W2997261255","https://openalex.org/W3093462071","https://openalex.org/W3105014772","https://openalex.org/W6912502434","https://openalex.org/W6968572587"],"related_works":["https://openalex.org/W2911705859","https://openalex.org/W3083014421","https://openalex.org/W2491971255","https://openalex.org/W3089857460","https://openalex.org/W2031849970","https://openalex.org/W2602994676","https://openalex.org/W4366824614","https://openalex.org/W3033068951","https://openalex.org/W4286856369","https://openalex.org/W2052139633"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
