{"id":"https://openalex.org/W3156270925","doi":"https://doi.org/10.1038/s42256-021-00325-y","title":"Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms","display_name":"Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms","publication_year":2021,"publication_date":"2021-04-12","ids":{"openalex":"https://openalex.org/W3156270925","doi":"https://doi.org/10.1038/s42256-021-00325-y","mag":"3156270925"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-021-00325-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00325-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038856286","display_name":"Roman Schulte-Sasse","orcid":"https://orcid.org/0000-0003-0374-4550"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roman Schulte-Sasse","raw_affiliation_strings":["Max Planck Institute for Molecular Genetics, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081109672","display_name":"Stefan Budach","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Budach","raw_affiliation_strings":["Max Planck Institute for Molecular Genetics, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035633092","display_name":"Denes Hnisz","orcid":"https://orcid.org/0000-0002-6256-1693"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Denes Hnisz","raw_affiliation_strings":["Max Planck Institute for Molecular Genetics, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102718482","display_name":"Annalisa Marsico","orcid":"https://orcid.org/0000-0003-0327-5555"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Annalisa Marsico","raw_affiliation_strings":["Institute for Computational Biology, Helmholtz Zentrum Munich, German Research Centre for Environmental Health, Munich, Germany","Max Planck Institute for Molecular Genetics, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Computational Biology, Helmholtz Zentrum Munich, German Research Centre for Environmental Health, Munich, Germany","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5102718482"],"corresponding_institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210142260"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":12.5252,"has_fulltext":false,"cited_by_count":242,"citation_normalized_percentile":{"value":0.99338425,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"3","issue":"6","first_page":"513","last_page":"526"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.683045506477356},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6355496644973755},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5027978420257568},{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.4473865032196045},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.43218040466308594},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.42703408002853394},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4225027859210968},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.42020711302757263},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.41939204931259155},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41936346888542175},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4156167209148407},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.41146764159202576},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34697139263153076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34226468205451965},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21086660027503967},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1833314597606659},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.16700297594070435},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.08627140522003174}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.683045506477356},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6355496644973755},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5027978420257568},{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.4473865032196045},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43218040466308594},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.42703408002853394},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4225027859210968},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.42020711302757263},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.41939204931259155},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41936346888542175},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4156167209148407},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.41146764159202576},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34697139263153076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34226468205451965},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21086660027503967},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1833314597606659},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.16700297594070435},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.08627140522003174},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1038/s42256-021-00325-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-021-00325-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:61856","is_oa":false,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=61856","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat. Mach. Intell. 3, 513\u2013526 (2021)","raw_type":"Text"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:61856","is_oa":false,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61856","pdf_url":null,"source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat. Mach. Intell. 3, 513\u2013526 (2021)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":106,"referenced_works":["https://openalex.org/W569478347","https://openalex.org/W1559830894","https://openalex.org/W1787224781","https://openalex.org/W1854214752","https://openalex.org/W1965285497","https://openalex.org/W1984252723","https://openalex.org/W2002375694","https://openalex.org/W2005227457","https://openalex.org/W2007040134","https://openalex.org/W2009720434","https://openalex.org/W2011585726","https://openalex.org/W2017138237","https://openalex.org/W2019925980","https://openalex.org/W2021289163","https://openalex.org/W2021536610","https://openalex.org/W2040380803","https://openalex.org/W2043004414","https://openalex.org/W2044433401","https://openalex.org/W2045355987","https://openalex.org/W2080310417","https://openalex.org/W2088891952","https://openalex.org/W2090757807","https://openalex.org/W2094804609","https://openalex.org/W2095115211","https://openalex.org/W2104500293","https://openalex.org/W2104837386","https://openalex.org/W2107665951","https://openalex.org/W2113380956","https://openalex.org/W2114031931","https://openalex.org/W2117513900","https://openalex.org/W2118382442","https://openalex.org/W2118527670","https://openalex.org/W2124855963","https://openalex.org/W2130158951","https://openalex.org/W2130410032","https://openalex.org/W2137518425","https://openalex.org/W2148266291","https://openalex.org/W2149139293","https://openalex.org/W2152061559","https://openalex.org/W2153056550","https://openalex.org/W2154851992","https://openalex.org/W2157852151","https://openalex.org/W2158485828","https://openalex.org/W2159482845","https://openalex.org/W2168303063","https://openalex.org/W2214074259","https://openalex.org/W2225255384","https://openalex.org/W2403874820","https://openalex.org/W2406128552","https://openalex.org/W2468907370","https://openalex.org/W2511667040","https://openalex.org/W2519887557","https://openalex.org/W2540177567","https://openalex.org/W2557187647","https://openalex.org/W2566227895","https://openalex.org/W2586373162","https://openalex.org/W2614443510","https://openalex.org/W2624021832","https://openalex.org/W2694334836","https://openalex.org/W2741508285","https://openalex.org/W2757081999","https://openalex.org/W2765165592","https://openalex.org/W2767336741","https://openalex.org/W2784760926","https://openalex.org/W2784814091","https://openalex.org/W2791472863","https://openalex.org/W2794479004","https://openalex.org/W2796408191","https://openalex.org/W2796842840","https://openalex.org/W2801400022","https://openalex.org/W2805911918","https://openalex.org/W2884724578","https://openalex.org/W2886093832","https://openalex.org/W2890112540","https://openalex.org/W2891589486","https://openalex.org/W2894573839","https://openalex.org/W2898598946","https://openalex.org/W2900569176","https://openalex.org/W2901125500","https://openalex.org/W2905202832","https://openalex.org/W2911233690","https://openalex.org/W2921802966","https://openalex.org/W2935703330","https://openalex.org/W2946235775","https://openalex.org/W2949066452","https://openalex.org/W2960168381","https://openalex.org/W2963847595","https://openalex.org/W2964051675","https://openalex.org/W2964311892","https://openalex.org/W2976321626","https://openalex.org/W2976852018","https://openalex.org/W2981548686","https://openalex.org/W2985613549","https://openalex.org/W2995793704","https://openalex.org/W3000146196","https://openalex.org/W3005037272","https://openalex.org/W3006500278","https://openalex.org/W3009097360","https://openalex.org/W3012742951","https://openalex.org/W3016349400","https://openalex.org/W3043994525","https://openalex.org/W3100711616","https://openalex.org/W3104097132","https://openalex.org/W3156270925","https://openalex.org/W4294216483","https://openalex.org/W4310895557"],"related_works":["https://openalex.org/W2101998831","https://openalex.org/W1922372990","https://openalex.org/W2032694615","https://openalex.org/W2086904135","https://openalex.org/W2162117109","https://openalex.org/W2157795344","https://openalex.org/W3016389020","https://openalex.org/W3123028737","https://openalex.org/W2022953464","https://openalex.org/W2043924719"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":77},{"year":2024,"cited_by_count":64},{"year":2023,"cited_by_count":47},{"year":2022,"cited_by_count":34},{"year":2021,"cited_by_count":9}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
