{"id":"https://openalex.org/W3040360568","doi":"https://doi.org/10.1038/s42256-020-0201-6","title":"Deep learning decodes the principles of differential gene expression","display_name":"Deep learning decodes the principles of differential gene expression","publication_year":2020,"publication_date":"2020-07-06","ids":{"openalex":"https://openalex.org/W3040360568","doi":"https://doi.org/10.1038/s42256-020-0201-6","mag":"3040360568","pmid":"https://pubmed.ncbi.nlm.nih.gov/32671330"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-020-0201-6","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-0201-6","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7363043","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011843654","display_name":"Shinya Tasaki","orcid":"https://orcid.org/0000-0003-3656-7394"},"institutions":[{"id":"https://openalex.org/I1285301757","display_name":"Rush University Medical Center","ror":"https://ror.org/01j7c0b24","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285301757"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shinya Tasaki","raw_affiliation_strings":["Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago IL, USA","Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL, USA"],"raw_orcid":"https://orcid.org/0000-0003-3656-7394","affiliations":[{"raw_affiliation_string":"Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago IL, USA","institution_ids":["https://openalex.org/I1285301757"]},{"raw_affiliation_string":"Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL, USA","institution_ids":["https://openalex.org/I1285301757"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072516895","display_name":"Chris Gaiteri","orcid":"https://orcid.org/0000-0001-7838-8664"},"institutions":[{"id":"https://openalex.org/I1285301757","display_name":"Rush University Medical Center","ror":"https://ror.org/01j7c0b24","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285301757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Gaiteri","raw_affiliation_strings":["Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago IL, USA","Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago IL, USA","institution_ids":["https://openalex.org/I1285301757"]},{"raw_affiliation_string":"Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL, USA","institution_ids":["https://openalex.org/I1285301757"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065367298","display_name":"Sara Mostafavi","orcid":"https://orcid.org/0000-0003-4698-1177"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sara Mostafavi","raw_affiliation_strings":["University of British Columbia, Vancouver, British Columbia, Canada","University of British Columbia, Vancouver, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of British Columbia, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112116111","display_name":"Yanling Wang","orcid":"https://orcid.org/0009-0003-0061-9946"},"institutions":[{"id":"https://openalex.org/I1285301757","display_name":"Rush University Medical Center","ror":"https://ror.org/01j7c0b24","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285301757"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanling Wang","raw_affiliation_strings":["Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago IL, USA","Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago IL, USA","institution_ids":["https://openalex.org/I1285301757"]},{"raw_affiliation_string":"Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL, USA","institution_ids":["https://openalex.org/I1285301757"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5011843654"],"corresponding_institution_ids":["https://openalex.org/I1285301757"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":2.1145,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.87976523,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2","issue":"7","first_page":"376","last_page":"386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6810367107391357},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.6359217762947083},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6343424320220947},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5788541436195374},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.57347172498703},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.5396092534065247},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4709140956401825},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45818203687667847},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.45045381784439087},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.43609946966171265},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.42055103182792664},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39220792055130005},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.21775230765342712}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6810367107391357},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.6359217762947083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6343424320220947},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5788541436195374},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.57347172498703},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.5396092534065247},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4709140956401825},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45818203687667847},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.45045381784439087},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.43609946966171265},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.42055103182792664},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39220792055130005},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21775230765342712},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1038/s42256-020-0201-6","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-0201-6","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:32671330","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32671330","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:europepmc.org:6686120","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7363043","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7363043","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7363043","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7363043","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7363043","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1370504031","display_name":null,"funder_award_id":"P30AG010161","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2521704030","display_name":null,"funder_award_id":"P30AG010161","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G3743240706","display_name":null,"funder_award_id":"R01 AG017917","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3975997017","display_name":null,"funder_award_id":"R01AG061798","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5004482764","display_name":null,"funder_award_id":"R01 AG061798","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G5277034656","display_name":null,"funder_award_id":"R01 AG015819","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G5903453376","display_name":null,"funder_award_id":"R01 AG057911","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6984873069","display_name":null,"funder_award_id":"R01AG057911","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G7224231729","display_name":null,"funder_award_id":"P30 AG010161","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8655096157","display_name":null,"funder_award_id":"R01AG057911","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8960728274","display_name":null,"funder_award_id":"R01AG061798","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1437335841","https://openalex.org/W1505191356","https://openalex.org/W1533942137","https://openalex.org/W1816176398","https://openalex.org/W1823837540","https://openalex.org/W1971225285","https://openalex.org/W1984574291","https://openalex.org/W1987557775","https://openalex.org/W1997535872","https://openalex.org/W2006617902","https://openalex.org/W2009308529","https://openalex.org/W2028769116","https://openalex.org/W2062896748","https://openalex.org/W2070050178","https://openalex.org/W2083045667","https://openalex.org/W2091811407","https://openalex.org/W2097948046","https://openalex.org/W2134629862","https://openalex.org/W2137465688","https://openalex.org/W2146512944","https://openalex.org/W2154331071","https://openalex.org/W2159482845","https://openalex.org/W2162674813","https://openalex.org/W2209106767","https://openalex.org/W2214074259","https://openalex.org/W2227690477","https://openalex.org/W2256016639","https://openalex.org/W2345356016","https://openalex.org/W2534008312","https://openalex.org/W2605409611","https://openalex.org/W2627064270","https://openalex.org/W2741508285","https://openalex.org/W2766541008","https://openalex.org/W2785792383","https://openalex.org/W2786189816","https://openalex.org/W2804408552","https://openalex.org/W2883945062","https://openalex.org/W2891906735","https://openalex.org/W2909194804","https://openalex.org/W2921170286","https://openalex.org/W2938107481","https://openalex.org/W2945038365","https://openalex.org/W2947187332","https://openalex.org/W2962862931","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W2737319532","https://openalex.org/W2062993691","https://openalex.org/W2128583238","https://openalex.org/W2034377088","https://openalex.org/W2115386182","https://openalex.org/W2125870006"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
