{"id":"https://openalex.org/W3035387075","doi":"https://doi.org/10.1038/s42256-020-0193-2","title":"Gaussian embedding for large-scale gene set analysis","display_name":"Gaussian embedding for large-scale gene set analysis","publication_year":2020,"publication_date":"2020-06-15","ids":{"openalex":"https://openalex.org/W3035387075","doi":"https://doi.org/10.1038/s42256-020-0193-2","mag":"3035387075","pmid":"https://pubmed.ncbi.nlm.nih.gov/32968711"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-020-0193-2","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-0193-2","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7505077","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100371324","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0003-4210-1670"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["Department of Bioengineering, Stanford University, Stanford, CA 94305, USA","Department of Bioengineering, Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Bioengineering, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051501700","display_name":"Emily Flynn","orcid":"https://orcid.org/0000-0001-9703-3594"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily R. Flynn","raw_affiliation_strings":["Biomedical Informatics Training Program, Stanford University, Stanford, CA 94305, USA","Biomedical Informatics Training Program, Stanford University, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084043782","display_name":"Russ B. Altman","orcid":"https://orcid.org/0000-0003-3859-2905"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russ B. Altman","raw_affiliation_strings":["Biomedical Informatics Training Program, Stanford University, Stanford, CA 94305, USA","Department of Bioengineering, Stanford University, Stanford, CA 94305, USA","Department of Genetics, Stanford University, Stanford, CA 94305, USA","Biomedical Informatics Training Program, Stanford University, Stanford, CA, USA"],"raw_orcid":"https://orcid.org/0000-0003-3859-2905","affiliations":[{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Bioengineering, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Biomedical Informatics Training Program, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100371324"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":0.834,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.71295747,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2","issue":"7","first_page":"387","last_page":"395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.7398223876953125},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6427366733551025},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5753212571144104},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.53773033618927},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5365476608276367},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.523466944694519},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4994051456451416},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.4827958345413208},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3837127983570099},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.356656938791275},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3552076816558838},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27020594477653503},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.186114102602005},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1830247938632965}],"concepts":[{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.7398223876953125},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6427366733551025},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5753212571144104},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.53773033618927},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5365476608276367},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.523466944694519},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4994051456451416},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.4827958345413208},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3837127983570099},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.356656938791275},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3552076816558838},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27020594477653503},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.186114102602005},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1830247938632965},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1038/s42256-020-0193-2","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-0193-2","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:32968711","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32968711","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:europepmc.org:6686446","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7505077","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7505077","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7505077","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7505077","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7505077","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W1965555277","https://openalex.org/W1966331733","https://openalex.org/W1976526581","https://openalex.org/W1981612867","https://openalex.org/W1986519866","https://openalex.org/W1987219048","https://openalex.org/W1989277387","https://openalex.org/W1990223774","https://openalex.org/W2006524711","https://openalex.org/W2009720434","https://openalex.org/W2010457001","https://openalex.org/W2016391141","https://openalex.org/W2045121497","https://openalex.org/W2049257957","https://openalex.org/W2056782561","https://openalex.org/W2063928888","https://openalex.org/W2073459066","https://openalex.org/W2073587810","https://openalex.org/W2088891952","https://openalex.org/W2090601236","https://openalex.org/W2096173332","https://openalex.org/W2096766502","https://openalex.org/W2098427571","https://openalex.org/W2103017472","https://openalex.org/W2108475224","https://openalex.org/W2110684048","https://openalex.org/W2117235735","https://openalex.org/W2127069089","https://openalex.org/W2130410032","https://openalex.org/W2133465414","https://openalex.org/W2137089630","https://openalex.org/W2137687319","https://openalex.org/W2139258080","https://openalex.org/W2151372005","https://openalex.org/W2153848946","https://openalex.org/W2158485828","https://openalex.org/W2317688815","https://openalex.org/W2442835468","https://openalex.org/W2461427403","https://openalex.org/W2481510159","https://openalex.org/W2515937607","https://openalex.org/W2556519015","https://openalex.org/W2591941343","https://openalex.org/W2612467560","https://openalex.org/W2618530766","https://openalex.org/W2624021832","https://openalex.org/W2752172973","https://openalex.org/W2767849480","https://openalex.org/W2773456614","https://openalex.org/W2786016794","https://openalex.org/W2799305836","https://openalex.org/W2809365568","https://openalex.org/W2894795605","https://openalex.org/W2909679049","https://openalex.org/W2949435632","https://openalex.org/W2949681238","https://openalex.org/W2950854620","https://openalex.org/W2984318289","https://openalex.org/W4230962320","https://openalex.org/W4237335579","https://openalex.org/W4243999503"],"related_works":["https://openalex.org/W2060724872","https://openalex.org/W2082094785","https://openalex.org/W2202198356","https://openalex.org/W3087203342","https://openalex.org/W2377184161","https://openalex.org/W228984114","https://openalex.org/W4226360758","https://openalex.org/W2090026684","https://openalex.org/W2032799661","https://openalex.org/W2096259797"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}
