{"id":"https://openalex.org/W3033077186","doi":"https://doi.org/10.1038/s42256-020-0189-y","title":"A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories","display_name":"A novel machine learning framework for automated biomedical relation extraction from large-scale literature repositories","publication_year":2020,"publication_date":"2020-06-08","ids":{"openalex":"https://openalex.org/W3033077186","doi":"https://doi.org/10.1038/s42256-020-0189-y","mag":"3033077186"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-020-0189-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-0189-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076008539","display_name":"Lixiang Hong","orcid":"https://orcid.org/0000-0002-4753-7660"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lixiang Hong","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-4753-7660","affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112516184","display_name":"Jinjian Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinjian Lin","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101531700","display_name":"Shuya Li","orcid":"https://orcid.org/0009-0003-2878-0926"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuya Li","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100689470","display_name":"Fang Wan","orcid":"https://orcid.org/0000-0003-1647-3278"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangping Wan","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025057790","display_name":"Hui Yang","orcid":"https://orcid.org/0000-0002-8040-2792"},"institutions":[{"id":"https://openalex.org/I4210140530","display_name":"Silexon AI Technology (China)","ror":"https://ror.org/04r7av415","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210140530"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Yang","raw_affiliation_strings":["Silexon Co. Ltd, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Silexon Co. Ltd, Nanjing, China","institution_ids":["https://openalex.org/I4210140530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101911266","display_name":"Tao Jiang","orcid":"https://orcid.org/0000-0003-3833-4498"},"institutions":[{"id":"https://openalex.org/I103635307","display_name":"University of California, Riverside","ror":"https://ror.org/03nawhv43","country_code":"US","type":"education","lineage":["https://openalex.org/I103635307"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Tao Jiang","raw_affiliation_strings":["Bioinformatics Division, TNLIST, MOE Key Laboratory of Bioinformatics and Center for Synthetic and Systems Biology, Tsinghua University, Beijing, China","Department of Computer Science and Engineering, University of California, Riverside, CA, USA","MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Division, TNLIST, MOE Key Laboratory of Bioinformatics and Center for Synthetic and Systems Biology, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California, Riverside, CA, USA","institution_ids":["https://openalex.org/I103635307"]},{"raw_affiliation_string":"MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067578751","display_name":"Dan Zhao","orcid":"https://orcid.org/0000-0003-0195-6031"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dan Zhao","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-0195-6031","affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009826239","display_name":"Jianyang Zeng","orcid":"https://orcid.org/0000-0003-0950-7716"},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jianyang Zeng","raw_affiliation_strings":["Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-0950-7716","affiliations":[{"raw_affiliation_string":"Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]},{"raw_affiliation_string":"MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5009826239","https://openalex.org/A5067578751"],"corresponding_institution_ids":["https://openalex.org/I99065089"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":3.6687,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.94256308,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"2","issue":"6","first_page":"347","last_page":"355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7995470762252808},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.6135029792785645},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5965327620506287},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.58831387758255},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5079591870307922},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49386388063430786},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.46459150314331055},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.45851847529411316},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4520523250102997},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.45192596316337585},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.449106901884079},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3816831111907959},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37173402309417725},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.3605075180530548},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20763269066810608}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7995470762252808},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.6135029792785645},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5965327620506287},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.58831387758255},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5079591870307922},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49386388063430786},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.46459150314331055},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.45851847529411316},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4520523250102997},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.45192596316337585},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.449106901884079},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3816831111907959},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37173402309417725},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.3605075180530548},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20763269066810608},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-020-0189-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-0189-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W1423339008","https://openalex.org/W1604644367","https://openalex.org/W1665214252","https://openalex.org/W1816079941","https://openalex.org/W2007069550","https://openalex.org/W2010783249","https://openalex.org/W2095705004","https://openalex.org/W2107598941","https://openalex.org/W2110119381","https://openalex.org/W2130237711","https://openalex.org/W2145578524","https://openalex.org/W2170146596","https://openalex.org/W2170189740","https://openalex.org/W2174726731","https://openalex.org/W2194775991","https://openalex.org/W2250417532","https://openalex.org/W2251135946","https://openalex.org/W2251939518","https://openalex.org/W2264517602","https://openalex.org/W2297537563","https://openalex.org/W2308720496","https://openalex.org/W2346452181","https://openalex.org/W2405553925","https://openalex.org/W2485374661","https://openalex.org/W2515462165","https://openalex.org/W2517194566","https://openalex.org/W2527896214","https://openalex.org/W2547875792","https://openalex.org/W2557321428","https://openalex.org/W2560748602","https://openalex.org/W2602856279","https://openalex.org/W2619818172","https://openalex.org/W2626778328","https://openalex.org/W2744921315","https://openalex.org/W2753953057","https://openalex.org/W2766208765","https://openalex.org/W2770565711","https://openalex.org/W2785001576","https://openalex.org/W2790602452","https://openalex.org/W2795129839","https://openalex.org/W2796801810","https://openalex.org/W2884165257","https://openalex.org/W2891417293","https://openalex.org/W2910406387","https://openalex.org/W2950577311","https://openalex.org/W2952522777","https://openalex.org/W2953391617","https://openalex.org/W2963021258","https://openalex.org/W2963091558","https://openalex.org/W2963355447","https://openalex.org/W2963560594","https://openalex.org/W2963580443","https://openalex.org/W2963956654","https://openalex.org/W2964026782","https://openalex.org/W2964121744","https://openalex.org/W2964193968","https://openalex.org/W2964199361","https://openalex.org/W2967440899","https://openalex.org/W2984318289","https://openalex.org/W4236096403","https://openalex.org/W4301018410","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W2805262146","https://openalex.org/W4379517534","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W842810586","https://openalex.org/W2092919065","https://openalex.org/W4236762297","https://openalex.org/W3138801416","https://openalex.org/W2369351710","https://openalex.org/W2594363579"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
