{"id":"https://openalex.org/W3122486793","doi":"https://doi.org/10.1038/s42256-020-00282-y","title":"Deep neural networks identify sequence context features predictive of transcription factor binding","display_name":"Deep neural networks identify sequence context features predictive of transcription factor binding","publication_year":2021,"publication_date":"2021-01-18","ids":{"openalex":"https://openalex.org/W3122486793","doi":"https://doi.org/10.1038/s42256-020-00282-y","mag":"3122486793","pmid":"https://pubmed.ncbi.nlm.nih.gov/33796819"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-020-00282-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-00282-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://escholarship.org/uc/item/5v61d9jv","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050205353","display_name":"An Zheng","orcid":"https://orcid.org/0000-0002-3689-2712"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"An Zheng","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA USA","Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032698925","display_name":"Michael Lamkin","orcid":"https://orcid.org/0000-0001-5797-1914"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Lamkin","raw_affiliation_strings":["Department of Bioengineering, University of California San Diego, La Jolla, CA USA","Department of Bioengineering, University of California San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, CA USA","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Bioengineering, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075057949","display_name":"Hanqing Zhao","orcid":"https://orcid.org/0000-0001-9020-5488"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanqing Zhao","raw_affiliation_strings":["Department of Biology, University of California San Diego, La Jolla, CA, USA","Department of Biological Sciences, University of California San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Biological Sciences, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009821911","display_name":"Cynthia Wu","orcid":"https://orcid.org/0000-0002-3687-2199"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cynthia Wu","raw_affiliation_strings":["Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA USA","Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Bioinformatics and Systems Biology Program, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091622325","display_name":"Hao Su","orcid":"https://orcid.org/0000-0002-9686-6540"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hao Su","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA USA","Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065055599","display_name":"Melissa Gymrek","orcid":"https://orcid.org/0000-0002-6086-3903"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Melissa Gymrek","raw_affiliation_strings":["Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA USA","Department of Medicine, University of California San Diego, La Jolla, CA USA","Department of Medicine, University of California San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Medicine, University of California San Diego, La Jolla, CA USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Medicine, University of California San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5065055599"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":{"value":9750,"currency":"EUR","value_usd":11690},"fwci":7.7252,"has_fulltext":true,"cited_by_count":99,"citation_normalized_percentile":{"value":0.98410133,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"3","issue":"2","first_page":"172","last_page":"180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6835529804229736},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6639575362205505},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.6187671422958374},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.6096197366714478},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5667045712471008},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.5493729114532471},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.450417697429657},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.44205591082572937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4346640110015869},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.42050012946128845},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4175490736961365},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.41634559631347656},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38634192943573},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33290421962738037},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30327361822128296},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.29990991950035095},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16081586480140686}],"concepts":[{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6835529804229736},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6639575362205505},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.6187671422958374},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.6096197366714478},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5667045712471008},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5493729114532471},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.450417697429657},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.44205591082572937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4346640110015869},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.42050012946128845},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4175490736961365},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.41634559631347656},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38634192943573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33290421962738037},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30327361822128296},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.29990991950035095},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16081586480140686},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1038/s42256-020-00282-y","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-020-00282-y","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:33796819","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33796819","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature machine intelligence","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt5v61d9jv","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/5v61d9jv","pdf_url":"https://escholarship.org/uc/item/5v61d9jv","source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Machine Intelligence, vol 3, iss 2","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8009085","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8009085","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Mach Intell","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:escholarship.org:ark:/13030/qt5v61d9jv","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/5v61d9jv","pdf_url":"https://escholarship.org/uc/item/5v61d9jv","source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Machine Intelligence, vol 3, iss 2","raw_type":"article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1833903074","display_name":null,"funder_award_id":"K40 GPU","funder_id":"https://openalex.org/F4320309480","funder_display_name":"Nvidia"},{"id":"https://openalex.org/G2010355708","display_name":null,"funder_award_id":"Tesla K40 GPU","funder_id":"https://openalex.org/F4320309480","funder_display_name":"Nvidia"},{"id":"https://openalex.org/G2455377614","display_name":null,"funder_award_id":"1R21HG010070-01","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G2794777979","display_name":null,"funder_award_id":"1R21HG010070","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5801408398","display_name":null,"funder_award_id":"Tesla K40","funder_id":"https://openalex.org/F4320309480","funder_display_name":"Nvidia"}],"funders":[{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320310598","display_name":"Amazon Web Services","ror":"https://ror.org/04mv4n011"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3122486793.pdf","grobid_xml":"https://content.openalex.org/works/W3122486793.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1791369560","https://openalex.org/W1805065582","https://openalex.org/W1979342595","https://openalex.org/W1990893875","https://openalex.org/W2001042507","https://openalex.org/W2014677321","https://openalex.org/W2029873987","https://openalex.org/W2067430497","https://openalex.org/W2067899297","https://openalex.org/W2076154138","https://openalex.org/W2095799855","https://openalex.org/W2118608526","https://openalex.org/W2122732537","https://openalex.org/W2127860120","https://openalex.org/W2140952049","https://openalex.org/W2198606573","https://openalex.org/W2212528563","https://openalex.org/W2256016639","https://openalex.org/W2259938310","https://openalex.org/W2279960284","https://openalex.org/W2281392042","https://openalex.org/W2311591640","https://openalex.org/W2336509392","https://openalex.org/W2345512687","https://openalex.org/W2396979416","https://openalex.org/W2412481123","https://openalex.org/W2603617582","https://openalex.org/W2605409611","https://openalex.org/W2686467627","https://openalex.org/W2767749844","https://openalex.org/W2770178180","https://openalex.org/W2785792383","https://openalex.org/W2937686488","https://openalex.org/W2947187332","https://openalex.org/W2949204199","https://openalex.org/W2950326881","https://openalex.org/W2951410692","https://openalex.org/W2952239877","https://openalex.org/W2953384591","https://openalex.org/W2962858109","https://openalex.org/W2963029044","https://openalex.org/W2963468488","https://openalex.org/W2971699541","https://openalex.org/W3003257820","https://openalex.org/W3029661147","https://openalex.org/W3103145119","https://openalex.org/W6713134421","https://openalex.org/W6931248147"],"related_works":["https://openalex.org/W2073661767","https://openalex.org/W2143211236","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2103777723","https://openalex.org/W2159636084","https://openalex.org/W2610941444","https://openalex.org/W2117168988","https://openalex.org/W2154430121","https://openalex.org/W2162836426"],"abstract_inverted_index":{"Transcription":[0],"factors":[1],"(TFs)":[2],"bind":[3],"DNA":[4],"by":[5],"recognizing":[6],"specific":[7],"sequence":[8,57],"motifs,":[9],"typically":[10],"of":[11,20,30,92,104,111,122,137],"length":[12],"6-12bp.":[13],"A":[14],"motif":[15,67],"can":[16],"occur":[17],"many":[18],"thousands":[19],"times":[21],"in":[22,84],"the":[23,90,109,119],"human":[24],"genome,":[25],"but":[26],"only":[27],"a":[28,39,65,85],"subset":[29],"those":[31],"sites":[32],"are":[33],"actually":[34],"bound.":[35,71],"Here":[36],"we":[37],"present":[38],"machine":[40],"learning":[41,147],"framework":[42,75,130],"leveraging":[43],"existing":[44],"convolutional":[45],"neural":[46],"network":[47],"architectures":[48],"and":[49,55,98,118,140],"model":[50],"interpretation":[51],"techniques":[52],"to":[53,76,143,149],"identify":[54],"interpret":[56,150],"context":[58,93,100],"features":[59,101,123,135],"most":[60,102],"important":[61],"for":[62,81],"predicting":[63],"whether":[64],"particular":[66],"instance":[68],"will":[69],"be":[70],"We":[72,106],"apply":[73],"our":[74,129],"predict":[77],"binding":[78,139],"at":[79,95],"motifs":[80],"38":[82],"TFs":[83],"lymphoblastoid":[86],"cell":[87],"line,":[88],"score":[89],"importance":[91,121],"sequences":[94],"base-pair":[96],"resolution,":[97],"characterize":[99],"predictive":[103,136],"binding.":[105],"find":[107],"that":[108],"choice":[110],"training":[112],"data":[113],"heavily":[114],"influences":[115],"classification":[116],"accuracy":[117],"relative":[120],"such":[124],"as":[125],"open":[126],"chromatin.":[127],"Overall,":[128],"enables":[131],"novel":[132],"insights":[133],"into":[134],"TF":[138],"is":[141],"likely":[142],"inform":[144],"future":[145],"deep":[146],"applications":[148],"non-coding":[151],"genetic":[152],"variants.":[153]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":25},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":14}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
