{"id":"https://openalex.org/W2937917790","doi":"https://doi.org/10.1038/s42256-019-0037-0","title":"Clustering single-cell RNA-seq data with a model-based deep learning approach","display_name":"Clustering single-cell RNA-seq data with a model-based deep learning approach","publication_year":2019,"publication_date":"2019-04-09","ids":{"openalex":"https://openalex.org/W2937917790","doi":"https://doi.org/10.1038/s42256-019-0037-0","mag":"2937917790"},"language":"en","primary_location":{"id":"doi:10.1038/s42256-019-0037-0","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-019-0037-0","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004532673","display_name":"Tian Tian","orcid":"https://orcid.org/0000-0001-6147-1082"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tian Tian","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA"],"raw_orcid":"https://orcid.org/0000-0001-6147-1082","affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103030173","display_name":"Ji Wan","orcid":"https://orcid.org/0000-0002-5279-0345"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ji Wan","raw_affiliation_strings":["CuraCloud Corporation, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CuraCloud Corporation, Seattle, WA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100748969","display_name":"Qi Song","orcid":"https://orcid.org/0000-0002-1726-7858"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Qi Song","raw_affiliation_strings":["CuraCloud Corporation, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CuraCloud Corporation, Seattle, WA, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001916237","display_name":"Zhi Wei","orcid":"https://orcid.org/0000-0001-6059-4267"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhi Wei","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA"],"raw_orcid":"https://orcid.org/0000-0001-6059-4267","affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001916237"],"corresponding_institution_ids":["https://openalex.org/I118118575"],"apc_list":{"value":9750,"currency":"EUR","value_usd":11690},"apc_paid":null,"fwci":10.3146,"has_fulltext":false,"cited_by_count":455,"citation_normalized_percentile":{"value":0.99004609,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"1","issue":"4","first_page":"191","last_page":"198"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9771999716758728,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8638944625854492},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6869429349899292},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6647730469703674},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.52863609790802},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5076032876968384},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4572997987270355},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.44028711318969727},{"id":"https://openalex.org/keywords/rand-index","display_name":"Rand index","score":0.42654484510421753},{"id":"https://openalex.org/keywords/clustering-high-dimensional-data","display_name":"Clustering high-dimensional data","score":0.4109261929988861},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38336217403411865},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3634423613548279}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8638944625854492},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6869429349899292},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6647730469703674},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.52863609790802},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5076032876968384},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4572997987270355},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.44028711318969727},{"id":"https://openalex.org/C111442797","wikidata":"https://www.wikidata.org/wiki/Q7291446","display_name":"Rand index","level":3,"score":0.42654484510421753},{"id":"https://openalex.org/C184509293","wikidata":"https://www.wikidata.org/wiki/Q5136711","display_name":"Clustering high-dimensional data","level":3,"score":0.4109261929988861},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38336217403411865},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3634423613548279},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1038/s42256-019-0037-0","is_oa":false,"landing_page_url":"https://doi.org/10.1038/s42256-019-0037-0","pdf_url":null,"source":{"id":"https://openalex.org/S2912241403","display_name":"Nature Machine Intelligence","issn_l":"2522-5839","issn":["2522-5839"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Machine Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1499798934","https://openalex.org/W1580018887","https://openalex.org/W1665214252","https://openalex.org/W1979283544","https://openalex.org/W1988115241","https://openalex.org/W2025768430","https://openalex.org/W2033403400","https://openalex.org/W2037603696","https://openalex.org/W2100495367","https://openalex.org/W2102212449","https://openalex.org/W2107680358","https://openalex.org/W2109890799","https://openalex.org/W2116516955","https://openalex.org/W2121947440","https://openalex.org/W2127218421","https://openalex.org/W2132914434","https://openalex.org/W2135937351","https://openalex.org/W2145094598","https://openalex.org/W2163922914","https://openalex.org/W2187089797","https://openalex.org/W2222512263","https://openalex.org/W2231058499","https://openalex.org/W2608862709","https://openalex.org/W2735067671","https://openalex.org/W2741564801","https://openalex.org/W2741943936","https://openalex.org/W2747545374","https://openalex.org/W2760692740","https://openalex.org/W2761069142","https://openalex.org/W2785523195","https://openalex.org/W2788348358","https://openalex.org/W2789949350","https://openalex.org/W2792693509","https://openalex.org/W2800392236","https://openalex.org/W2802349965","https://openalex.org/W2805619986","https://openalex.org/W2809381176","https://openalex.org/W2949067670","https://openalex.org/W2949272108","https://openalex.org/W2951217100","https://openalex.org/W2951381561","https://openalex.org/W2951506174","https://openalex.org/W2952303649","https://openalex.org/W2953251392","https://openalex.org/W2953384591","https://openalex.org/W2964074409","https://openalex.org/W3105265400","https://openalex.org/W4235169531","https://openalex.org/W4237171445","https://openalex.org/W4285719527","https://openalex.org/W6713134421"],"related_works":["https://openalex.org/W4385270139","https://openalex.org/W3080491161","https://openalex.org/W3186815950","https://openalex.org/W2112801327","https://openalex.org/W2111119584","https://openalex.org/W2590034888","https://openalex.org/W4292621762","https://openalex.org/W2589483699","https://openalex.org/W3098102082","https://openalex.org/W3124860551"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":44},{"year":2025,"cited_by_count":98},{"year":2024,"cited_by_count":105},{"year":2023,"cited_by_count":72},{"year":2022,"cited_by_count":53},{"year":2021,"cited_by_count":57},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":7}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}