{"id":"https://openalex.org/W7119600013","doi":"https://doi.org/10.1038/s41746-025-02312-8","title":"Foundation model embeddings for multimodal oncology data integration","display_name":"Foundation model embeddings for multimodal oncology data integration","publication_year":2026,"publication_date":"2026-01-09","ids":{"openalex":"https://openalex.org/W7119600013","doi":"https://doi.org/10.1038/s41746-025-02312-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/41514042"},"language":"en","primary_location":{"id":"doi:10.1038/s41746-025-02312-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-02312-8","pdf_url":"https://www.nature.com/articles/s41746-025-02312-8_reference.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41746-025-02312-8_reference.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5122557087","display_name":"Tara P. Menon","orcid":null},"institutions":[{"id":"https://openalex.org/I5716644","display_name":"Carilion Clinic","ror":"https://ror.org/02rsjh069","country_code":"US","type":"funder","lineage":["https://openalex.org/I5716644"]},{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tara P. Menon","raw_affiliation_strings":["Virginia Tech Carilion School of Medicine, Roanoke, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Virginia Tech Carilion School of Medicine, Roanoke, VA, USA","institution_ids":["https://openalex.org/I5716644","https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102630855","display_name":"Arjun Mahajan","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arjun Mahajan","raw_affiliation_strings":["Harvard Medical School, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5122480890","display_name":"Dylan Powell","orcid":null},"institutions":[{"id":"https://openalex.org/I12093191","display_name":"University of Stirling","ror":"https://ror.org/045wgfr59","country_code":"GB","type":"education","lineage":["https://openalex.org/I12093191"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Dylan Powell","raw_affiliation_strings":["Faculty of Health Sciences & Sport, University of Stirling, Stirling, UK. dylan.powell@stir.ac.uk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences & Sport, University of Stirling, Stirling, UK. dylan.powell@stir.ac.uk","institution_ids":["https://openalex.org/I12093191"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5122480890"],"corresponding_institution_ids":["https://openalex.org/I12093191"],"apc_list":{"value":3590,"currency":"USD","value_usd":3590},"apc_paid":{"value":3590,"currency":"USD","value_usd":3590},"fwci":9.7346,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.94977314,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"9","issue":"1","first_page":"131","last_page":"131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.3165000081062317,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.3165000081062317,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.09149999916553497,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11714","display_name":"Multimodal Machine Learning Applications","score":0.05620000138878822,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.7038999795913696},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5611000061035156},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.5554999709129333},{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.5390999913215637},{"id":"https://openalex.org/keywords/system-integration","display_name":"System integration","score":0.45190000534057617},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.4422000050544739},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.4189999997615814},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.3817000091075897},{"id":"https://openalex.org/keywords/precision-oncology","display_name":"Precision oncology","score":0.3799000084400177}],"concepts":[{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.7038999795913696},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.592199981212616},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5611000061035156},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.5554999709129333},{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.5390999913215637},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.47440001368522644},{"id":"https://openalex.org/C19527686","wikidata":"https://www.wikidata.org/wiki/Q1665453","display_name":"System integration","level":2,"score":0.45190000534057617},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.4422000050544739},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.4189999997615814},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.3817000091075897},{"id":"https://openalex.org/C3020497934","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision oncology","level":3,"score":0.3799000084400177},{"id":"https://openalex.org/C3018822202","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Patient data","level":2,"score":0.37290000915527344},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3425000011920929},{"id":"https://openalex.org/C2989236134","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Patient care","level":2,"score":0.335999995470047},{"id":"https://openalex.org/C3020606620","wikidata":"https://www.wikidata.org/wiki/Q179661","display_name":"Treatment modality","level":2,"score":0.33410000801086426},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.3034999966621399},{"id":"https://openalex.org/C2776598537","wikidata":"https://www.wikidata.org/wiki/Q1812651","display_name":"Clinical Oncology","level":3,"score":0.2992999851703644},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.29580000042915344},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.2897000014781952},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2879999876022339},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.27959999442100525},{"id":"https://openalex.org/C100463513","wikidata":"https://www.wikidata.org/wiki/Q5227322","display_name":"Data model (GIS)","level":2,"score":0.27880001068115234},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.27799999713897705},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.2615000009536743},{"id":"https://openalex.org/C96522737","wikidata":"https://www.wikidata.org/wiki/Q17148345","display_name":"Path integration","level":2,"score":0.25429999828338623},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.2531000077724457}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1038/s41746-025-02312-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-02312-8","pdf_url":"https://www.nature.com/articles/s41746-025-02312-8_reference.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},{"id":"pmid:41514042","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41514042","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NPJ digital medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:1a016c162e404372a1bc9b2adc024d2f","is_oa":true,"landing_page_url":"https://doaj.org/article/1a016c162e404372a1bc9b2adc024d2f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"npj Digital Medicine, Vol 9, Iss 1, Pp 1-4 (2026)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11689181","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12881576","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12881576","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12881576/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"NPJ Digit Med","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1038/s41746-025-02312-8","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-02312-8","pdf_url":"https://www.nature.com/articles/s41746-025-02312-8_reference.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7119600013.pdf","grobid_xml":"https://content.openalex.org/works/W7119600013.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W2106366262","https://openalex.org/W2158485828","https://openalex.org/W2174661749","https://openalex.org/W2397207097","https://openalex.org/W2761668583","https://openalex.org/W2795989238","https://openalex.org/W4293476620","https://openalex.org/W4383346782","https://openalex.org/W4390578581","https://openalex.org/W4399793782","https://openalex.org/W4400879250","https://openalex.org/W4400889241","https://openalex.org/W4401397810","https://openalex.org/W4408344375","https://openalex.org/W4409602458","https://openalex.org/W4415453459"],"related_works":[],"abstract_inverted_index":{"Cancer":[0],"care":[1],"generates":[2],"vast":[3],"quantities":[4],"of":[5],"data":[6,50,64],"including":[7],"clinical":[8,30,91],"records,":[9],"pathology":[10],"images,":[11,54],"radiology":[12],"scans,":[13],"and":[14,38,55,90,92],"molecular":[15,56],"profiles,":[16],"yet":[17],"these":[18,63],"modalities":[19],"are":[20],"rarely":[21],"integrated":[22],"in":[23,80,87],"a":[24,59],"systematic,":[25],"automated":[26],"manner":[27],"within":[28,84],"routine":[29],"workflows,":[31],"remaining":[32],"largely":[33],"siloed":[34],"across":[35],"separate":[36],"departmental":[37],"technical":[39,93],"systems.":[40],"Foundation":[41],"model-driven":[42],"embeddings\u2014or":[43],"numerical":[44],"representations":[45],"(vectors)":[46],"that":[47,95],"summarize":[48],"complex":[49],"such":[51],"as":[52],"text,":[53],"profiles":[57],"\u2014offer":[58],"framework":[60],"to":[61,77,100],"integrate":[62],"streams":[65],"into":[66],"unified":[67],"patient":[68],"representations.":[69],"Here":[70],"we":[71],"examine":[72],"the":[73],"HONeYBEE":[74],"platform\u2019s":[75],"approach":[76],"multimodal":[78],"integration":[79],"oncology,":[81],"situate":[82],"it":[83],"broader":[85],"developments":[86],"representation":[88],"learning,":[89],"challenges":[94],"may":[96],"shape":[97],"its":[98],"path":[99],"implementation1.":[101]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2026-01-10T00:00:00"}
