{"id":"https://openalex.org/W4416759720","doi":"https://doi.org/10.1038/s41746-025-02041-y","title":"ShapeField-lung: continuous shape embedding for early lung cancer detection via pulmonary nodule segmentation","display_name":"ShapeField-lung: continuous shape embedding for early lung cancer detection via pulmonary nodule segmentation","publication_year":2025,"publication_date":"2025-11-27","ids":{"openalex":"https://openalex.org/W4416759720","doi":"https://doi.org/10.1038/s41746-025-02041-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/41310368"},"language":"en","primary_location":{"id":"doi:10.1038/s41746-025-02041-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-02041-y","pdf_url":"https://www.nature.com/articles/s41746-025-02041-y_reference.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41746-025-02041-y_reference.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034882484","display_name":"Xuyu Gu","orcid":"https://orcid.org/0000-0001-7739-5301"},"institutions":[{"id":"https://openalex.org/I4210127126","display_name":"Shanghai Pulmonary Hospital","ror":"https://ror.org/033nbnf69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127126"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuyu Gu","raw_affiliation_strings":["Department of Oncology, Shanghai Pulmonary Hospital, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Shanghai Pulmonary Hospital, Shanghai, China","institution_ids":["https://openalex.org/I4210127126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101402785","display_name":"Yifei Zhu","orcid":"https://orcid.org/0000-0001-5393-0445"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210093194","display_name":"Fudan University Shanghai Cancer Center","ror":"https://ror.org/00my25942","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210093194"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifei Zhu","raw_affiliation_strings":["Cancer Institute, Fudan University Shanghai Cancer Center, Shanghai, China","Department of Oncology, Shanghai Medical College of Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Institute, Fudan University Shanghai Cancer Center, Shanghai, China","institution_ids":["https://openalex.org/I4210093194"]},{"raw_affiliation_string":"Department of Oncology, Shanghai Medical College of Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I133868755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100316247","display_name":"Chuangqi Li","orcid":null},"institutions":[{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuangqi Li","raw_affiliation_strings":["School of Vehicle and Mobility, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Vehicle and Mobility, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100661577","display_name":"Xinnan Xu","orcid":"https://orcid.org/0000-0002-5508-6716"},"institutions":[{"id":"https://openalex.org/I4210127126","display_name":"Shanghai Pulmonary Hospital","ror":"https://ror.org/033nbnf69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127126"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinnan Xu","raw_affiliation_strings":["Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China. xxn@tongji.edu.cn","Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China. xxn@tongji.edu.cn","institution_ids":["https://openalex.org/I4210127126"]},{"raw_affiliation_string":"Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China","institution_ids":["https://openalex.org/I4210127126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109272566","display_name":"Kaiqi Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127126","display_name":"Shanghai Pulmonary Hospital","ror":"https://ror.org/033nbnf69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127126"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kaiqi Jin","raw_affiliation_strings":["Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China. kaiqijin@tongji.edu.cn","Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China. kaiqijin@tongji.edu.cn","institution_ids":["https://openalex.org/I4210127126"]},{"raw_affiliation_string":"Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China","institution_ids":["https://openalex.org/I4210127126"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100699649","display_name":"Li Xu","orcid":"https://orcid.org/0000-0001-5968-5751"},"institutions":[{"id":"https://openalex.org/I4210127126","display_name":"Shanghai Pulmonary Hospital","ror":"https://ror.org/033nbnf69","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127126"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Li Xu","raw_affiliation_strings":["Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China. xl_shp@tongji.edu.cn","Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China. xl_shp@tongji.edu.cn","institution_ids":["https://openalex.org/I4210127126"]},{"raw_affiliation_string":"Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Shanghai, China","institution_ids":["https://openalex.org/I4210127126"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100661577","https://openalex.org/A5100699649","https://openalex.org/A5109272566"],"corresponding_institution_ids":["https://openalex.org/I4210127126"],"apc_list":{"value":3060,"currency":"USD","value_usd":3590},"apc_paid":{"value":3060,"currency":"USD","value_usd":3590},"fwci":1.5596,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85574543,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"736","last_page":"736"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.7465000152587891,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.7465000152587891,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10358","display_name":"Advanced Radiotherapy Techniques","score":0.09239999949932098,"subfield":{"id":"https://openalex.org/subfields/3108","display_name":"Radiation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.03840000182390213,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.7685999870300293},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7523000240325928},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6437000036239624},{"id":"https://openalex.org/keywords/dice","display_name":"Dice","score":0.5598000288009644},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5493999719619751},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.47749999165534973},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.44699999690055847},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.4438999891281128}],"concepts":[{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.7685999870300293},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7523000240325928},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6437000036239624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.620199978351593},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5691999793052673},{"id":"https://openalex.org/C22029948","wikidata":"https://www.wikidata.org/wiki/Q45089","display_name":"Dice","level":2,"score":0.5598000288009644},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5568000078201294},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5493999719619751},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.47749999165534973},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.44699999690055847},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.4438999891281128},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42309999465942383},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4122999906539917},{"id":"https://openalex.org/C2778559731","wikidata":"https://www.wikidata.org/wiki/Q23808793","display_name":"Radiomics","level":2,"score":0.3991999924182892},{"id":"https://openalex.org/C2776731575","wikidata":"https://www.wikidata.org/wiki/Q2916245","display_name":"Nodule (geology)","level":2,"score":0.3686000108718872},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.3465000092983246},{"id":"https://openalex.org/C2777405583","wikidata":"https://www.wikidata.org/wiki/Q6704277","display_name":"Lung cancer screening","level":3,"score":0.31150001287460327},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.30469998717308044},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.29429998993873596},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.2827000021934509},{"id":"https://openalex.org/C544519230","wikidata":"https://www.wikidata.org/wiki/Q32566","display_name":"Computed tomography","level":2,"score":0.27459999918937683},{"id":"https://openalex.org/C62354387","wikidata":"https://www.wikidata.org/wiki/Q875399","display_name":"Boundary (topology)","level":2,"score":0.2696000039577484}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1038/s41746-025-02041-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-02041-y","pdf_url":"https://www.nature.com/articles/s41746-025-02041-y_reference.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},{"id":"pmid:41310368","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41310368","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NPJ digital medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:082e85f0eeb84553a398dcfce94ae80d","is_oa":true,"landing_page_url":"https://doaj.org/article/082e85f0eeb84553a398dcfce94ae80d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"npj Digital Medicine, Vol 8, Iss 1, Pp 1-12 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41746-025-02041-y","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-02041-y","pdf_url":"https://www.nature.com/articles/s41746-025-02041-y_reference.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4416759720.pdf"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W1986649315","https://openalex.org/W2214619601","https://openalex.org/W2464708700","https://openalex.org/W2584017349","https://openalex.org/W2626997132","https://openalex.org/W2751665805","https://openalex.org/W2962849139","https://openalex.org/W2962914239","https://openalex.org/W2963046541","https://openalex.org/W2963627347","https://openalex.org/W2966434031","https://openalex.org/W3014974815","https://openalex.org/W3023282579","https://openalex.org/W3034395814","https://openalex.org/W3080237299","https://openalex.org/W3143564277","https://openalex.org/W4200150166","https://openalex.org/W4403152107","https://openalex.org/W4406895194","https://openalex.org/W4411555708"],"related_works":[],"abstract_inverted_index":{"Accurate":[0],"segmentation":[1],"of":[2,128],"pulmonary":[3],"nodules":[4],"in":[5],"low-dose":[6],"CT":[7],"(LDCT)":[8],"is":[9],"vital":[10],"for":[11,136],"early":[12],"lung":[13],"cancer":[14],"detection.":[15],"Existing":[16],"voxel-based":[17],"methods":[18],"often":[19],"fail":[20],"to":[21,69,99],"capture":[22],"irregular":[23],"nodule":[24,41],"boundaries,":[25],"especially":[26],"under":[27,120],"noisy,":[28],"low-contrast":[29],"conditions.":[30],"We":[31],"propose":[32],"ShapeField-Nodule,":[33],"a":[34,44,59,65,76,133],"continuous":[35,129],"shape":[36],"embedding":[37],"framework":[38],"that":[39,80],"models":[40],"geometry":[42],"as":[43,132],"signed":[45],"distance":[46],"field":[47],"(SDF),":[48],"enabling":[49],"sub-voxel":[50],"precision":[51],"and":[52,74,97,105,111,122],"anatomically":[53],"coherent":[54],"contours.":[55],"Our":[56],"method":[57],"integrates":[58],"lightweight":[60],"MLP-based":[61],"implicit":[62,130],"head":[63],"with":[64,84],"3D":[66],"U-Net":[67],"backbone":[68],"predict":[70],"dense":[71],"SDF":[72,82],"values,":[73],"introduces":[75],"shape-aware":[77],"refinement":[78],"loss":[79],"aligns":[81],"gradients":[83],"image":[85,138],"edges.":[86],"Unlike":[87],"discrete":[88],"masks,":[89],"our":[90],"representation":[91],"enforces":[92],"boundary":[93],"smoothness,":[94],"topology":[95],"regularization,":[96],"robustness":[98,119],"perturbations.":[100],"Evaluations":[101],"on":[102],"LIDC-IDRI,":[103],"LUNA16,":[104],"Tianchi":[106],"datasets":[107],"show":[108],"state-of-the-art":[109],"Dice":[110],"surface":[112],"metrics.":[113],"Extensive":[114],"experiments":[115],"demonstrate":[116],"superior":[117],"generalization,":[118],"noise,":[121],"inference":[123],"efficiency,":[124],"highlighting":[125],"the":[126],"potential":[127],"fields":[131],"principled":[134],"alternative":[135],"medical":[137],"segmentation.":[139]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-11-28T00:00:00"}
