{"id":"https://openalex.org/W4409717995","doi":"https://doi.org/10.1038/s41746-025-01615-0","title":"Understanding contraceptive switching rationales from real world clinical notes using large language models","display_name":"Understanding contraceptive switching rationales from real world clinical notes using large language models","publication_year":2025,"publication_date":"2025-04-23","ids":{"openalex":"https://openalex.org/W4409717995","doi":"https://doi.org/10.1038/s41746-025-01615-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/40269253"},"language":"en","primary_location":{"id":"doi:10.1038/s41746-025-01615-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-01615-0","pdf_url":"https://www.nature.com/articles/s41746-025-01615-0.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41746-025-01615-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035909569","display_name":"Brenda Y. Miao","orcid":"https://orcid.org/0000-0002-3393-9837"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Brenda Y. Miao","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA. miao.brenda1@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA. miao.brenda1@gmail.com","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052287559","display_name":"Christopher Y. K. Williams","orcid":"https://orcid.org/0000-0001-8867-1623"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Y. K. Williams","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA"],"raw_orcid":"https://orcid.org/0000-0001-8867-1623","affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093887407","display_name":"Ebenezer Chinedu-Eneh","orcid":null},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ebenezer Chinedu-Eneh","raw_affiliation_strings":["Department of Medicine, University of California San Francisco, San Francisco, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, University of California San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024959372","display_name":"Travis Zack","orcid":"https://orcid.org/0000-0002-1620-6455"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210167126","display_name":"UCSF Helen Diller Family Comprehensive Cancer Center","ror":"https://ror.org/05yndxy10","country_code":"US","type":"facility","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210110664","https://openalex.org/I4210167126"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Travis Zack","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA","Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I4210167126","https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039868033","display_name":"Emily Alsentzer","orcid":"https://orcid.org/0000-0002-5370-1746"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily Alsentzer","raw_affiliation_strings":["Division of General Internal Medicine, Brigham and Women's Hospital, Boston, MA, USA","Harvard Medical School, Boston, MA, USA"],"raw_orcid":"https://orcid.org/0000-0002-5370-1746","affiliations":[{"raw_affiliation_string":"Division of General Internal Medicine, Brigham and Women's Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036068985","display_name":"Atul J. Butte","orcid":"https://orcid.org/0000-0002-7433-2740"},"institutions":[{"id":"https://openalex.org/I1308683654","display_name":"Executive Office of the President","ror":"https://ror.org/00bws1855","country_code":"US","type":"government","lineage":["https://openalex.org/I1308683654"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Atul J. Butte","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA","Center for Data-driven Insights and Innovation, University of California, Office of the President, Oakland, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-7433-2740","affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Center for Data-driven Insights and Innovation, University of California, Office of the President, Oakland, CA, USA","institution_ids":["https://openalex.org/I1308683654"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081135036","display_name":"Irene Y. Chen","orcid":"https://orcid.org/0000-0001-5202-2111"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Irene Y. Chen","raw_affiliation_strings":["Berkeley AI Research, University of California, Berkeley, Berkeley, CA, USA","Computational Precision Health, University of California, Berkeley and University of California, San Francisco, Berkeley, CA, USA","Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Berkeley AI Research, University of California, Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Computational Precision Health, University of California, Berkeley and University of California, San Francisco, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486","https://openalex.org/I180670191"]},{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of California, Berkeley, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5035909569"],"corresponding_institution_ids":[],"apc_list":{"value":3060,"currency":"USD","value_usd":3060},"apc_paid":{"value":3060,"currency":"USD","value_usd":3060},"fwci":2.7451,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.88803071,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"8","issue":"1","first_page":"221","last_page":"221"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10600","display_name":"Reproductive Health and Contraception","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10600","display_name":"Reproductive Health and Contraception","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10209","display_name":"Global Maternal and Child Health","score":0.9254999756813049,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/commons","display_name":"Commons","score":0.5610234141349792},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3615763187408447},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.23215928673744202},{"id":"https://openalex.org/keywords/law","display_name":"Law","score":0.1118563711643219}],"concepts":[{"id":"https://openalex.org/C49427245","wikidata":"https://www.wikidata.org/wiki/Q9828451","display_name":"Commons","level":2,"score":0.5610234141349792},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3615763187408447},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.23215928673744202},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.1118563711643219}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1038/s41746-025-01615-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-01615-0","pdf_url":"https://www.nature.com/articles/s41746-025-01615-0.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},{"id":"pmid:40269253","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40269253","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NPJ digital medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:aeb1b34417704937b7d3a8585e84f33a","is_oa":true,"landing_page_url":"https://doaj.org/article/aeb1b34417704937b7d3a8585e84f33a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"npj Digital Medicine, Vol 8, Iss 1, Pp 1-8 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:10829748","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12019358","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1038/s41746-025-01615-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-025-01615-0","pdf_url":"https://www.nature.com/articles/s41746-025-01615-0.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8799999952316284,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1176383031","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G2895356224","display_name":null,"funder_award_id":"TR001872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5437152916","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6245908341","display_name":null,"funder_award_id":"UL1 TR001872","funder_id":"https://openalex.org/F4320332622","funder_display_name":"University of California, San Francisco"},{"id":"https://openalex.org/G7120641930","display_name":null,"funder_award_id":"TR001872","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332622","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409717995.pdf","grobid_xml":"https://content.openalex.org/works/W4409717995.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W151377110","https://openalex.org/W185624980","https://openalex.org/W2022102836","https://openalex.org/W2030498706","https://openalex.org/W2095588973","https://openalex.org/W2123229502","https://openalex.org/W2145270227","https://openalex.org/W2289625907","https://openalex.org/W2592395378","https://openalex.org/W2889326414","https://openalex.org/W2904393686","https://openalex.org/W2913031074","https://openalex.org/W2949676527","https://openalex.org/W2951036170","https://openalex.org/W2982153346","https://openalex.org/W2994689047","https://openalex.org/W3003257820","https://openalex.org/W3096282994","https://openalex.org/W3097132139","https://openalex.org/W3101930090","https://openalex.org/W3103145119","https://openalex.org/W3124677313","https://openalex.org/W3130338552","https://openalex.org/W3185341429","https://openalex.org/W4221142221","https://openalex.org/W4281487946","https://openalex.org/W4281644150","https://openalex.org/W4320486724","https://openalex.org/W4321487837","https://openalex.org/W4322718191","https://openalex.org/W4360887219","https://openalex.org/W4361289889","https://openalex.org/W4376602294","https://openalex.org/W4383223222","https://openalex.org/W4384071683","https://openalex.org/W4385381606","https://openalex.org/W4387425986","https://openalex.org/W4389156617","https://openalex.org/W4389205282","https://openalex.org/W4389421203","https://openalex.org/W4391940656","https://openalex.org/W4392822465","https://openalex.org/W4396691546","https://openalex.org/W4401306886","https://openalex.org/W4401306979","https://openalex.org/W4403603479"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"Understanding":[0],"reasons":[1,93,134],"for":[2,81,94,135],"treatment":[3,128],"switching":[4,45,95,137],"is":[5],"of":[6,32,71,99,123],"significant":[7],"medical":[8],"interest,":[9],"but":[10],"these":[11],"factors":[12,129],"are":[13],"often":[14],"only":[15],"found":[16],"in":[17,125,138],"unstructured":[18],"clinical":[19,49,89],"notes":[20,50],"and":[21,34,63,73,79,112,130],"can":[22],"be":[23],"difficult":[24],"to":[25,42,77],"extract.":[26],"We":[27],"evaluated":[28,87],"the":[29,53,60,82,121],"zero-shot":[30],"abilities":[31],"GPT-4":[33,58,91],"eight":[35],"other":[36],"open-source":[37,84],"large":[38],"language":[39],"models":[40],"(LLMs)":[41],"extract":[43],"contraceptive":[44,136],"information":[46],"from":[47,52],"1964":[48],"derived":[51],"UCSF":[54],"Information":[55],"Commons":[56],"dataset.":[57],"extracted":[59,92],"contraceptives":[61],"started":[62],"stopped":[64],"at":[65],"each":[66],"switch":[67],"with":[68,96],"microF1":[69],"scores":[70],"0.85":[72],"0.88,":[74],"respectively,":[75],"compared":[76],"0.81":[78],"0.88":[80],"best":[83],"model.":[85],"When":[86],"by":[88],"experts,":[90],"an":[97],"accuracy":[98],"91.4%":[100],"(2.2%":[101],"hallucination":[102],"rate).":[103],"Transformer-based":[104],"topic":[105],"modeling":[106],"identified":[107],"patient":[108],"preference,":[109],"adverse":[110],"events,":[111],"insurance":[113],"coverage":[114],"as":[115],"key":[116],"reasons.":[117],"These":[118],"findings":[119],"demonstrate":[120],"value":[122],"LLMs":[124],"identifying":[126],"complex":[127],"provide":[131],"insights":[132],"into":[133],"real-world":[139],"settings.":[140]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
