{"id":"https://openalex.org/W4405887088","doi":"https://doi.org/10.1038/s41746-024-01411-2","title":"Aligning knowledge concepts to whole slide images for precise histopathology image analysis","display_name":"Aligning knowledge concepts to whole slide images for precise histopathology image analysis","publication_year":2024,"publication_date":"2024-12-30","ids":{"openalex":"https://openalex.org/W4405887088","doi":"https://doi.org/10.1038/s41746-024-01411-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/39738468"},"language":"en","primary_location":{"id":"doi:10.1038/s41746-024-01411-2","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-024-01411-2","pdf_url":"https://www.nature.com/articles/s41746-024-01411-2.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41746-024-01411-2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112232539","display_name":"Weiqin Zhao","orcid":"https://orcid.org/0009-0004-7065-2220"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Weiqin Zhao","raw_affiliation_strings":["School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114400807","display_name":"Ziyu Guo","orcid":"https://orcid.org/0000-0001-9606-9691"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ziyu Guo","raw_affiliation_strings":["School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087118170","display_name":"Yinshuang Fan","orcid":"https://orcid.org/0009-0003-8103-5474"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yinshuang Fan","raw_affiliation_strings":["School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091216176","display_name":"Yuming Jiang","orcid":"https://orcid.org/0000-0001-6184-3931"},"institutions":[{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuming Jiang","raw_affiliation_strings":["School of Medicine, Wake Forest University, Winston-Salem, NC, USA"],"raw_orcid":"https://orcid.org/0000-0001-6184-3931","affiliations":[{"raw_affiliation_string":"School of Medicine, Wake Forest University, Winston-Salem, NC, USA","institution_ids":["https://openalex.org/I47251452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103099702","display_name":"Maximus C.F. Yeung","orcid":"https://orcid.org/0000-0001-9942-0109"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Maximus C. F. Yeung","raw_affiliation_strings":["Department of Pathology, The University of Hong Kong, Hong Kong SAR, China. mcfyeung@hku.hk","Department of Pathology, The University of Hong Kong, Hong Kong SAR, China"],"raw_orcid":"https://orcid.org/0000-0001-9942-0109","affiliations":[{"raw_affiliation_string":"Department of Pathology, The University of Hong Kong, Hong Kong SAR, China. mcfyeung@hku.hk","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Pathology, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012581106","display_name":"Lequan Yu","orcid":"https://orcid.org/0000-0002-9315-6527"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Lequan Yu","raw_affiliation_strings":["School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China. lqyu@hku.hk","School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China"],"raw_orcid":"https://orcid.org/0000-0002-9315-6527","affiliations":[{"raw_affiliation_string":"School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China. lqyu@hku.hk","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"School of Computing and Data Science, The University of Hong Kong, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012581106","https://openalex.org/A5103099702"],"corresponding_institution_ids":["https://openalex.org/I177725633","https://openalex.org/I889458895"],"apc_list":{"value":3060,"currency":"USD","value_usd":3060},"apc_paid":{"value":3060,"currency":"USD","value_usd":3060},"fwci":3.0563,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.92654917,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"7","issue":"1","first_page":"383","last_page":"383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.8574367761611938},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.708852231502533},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5932415723800659},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4464522898197174},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.43786200881004333},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08108779788017273}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.8574367761611938},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.708852231502533},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5932415723800659},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4464522898197174},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.43786200881004333},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08108779788017273}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1038/s41746-024-01411-2","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-024-01411-2","pdf_url":"https://www.nature.com/articles/s41746-024-01411-2.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},{"id":"pmid:39738468","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39738468","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NPJ digital medicine","raw_type":null},{"id":"pmh:oai:hub.hku.hk:10722/353503","is_oa":true,"landing_page_url":"https://hub.hku.hk/handle/10722/353503","pdf_url":"http://hub.hku.hk/bitstream/10722/353503/1/content.pdf","source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11685412","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11685412","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11685412/pdf/41746_2024_Article_1411.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"NPJ Digit Med","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:c3948fc85ca745dd897200af18562920","is_oa":true,"landing_page_url":"https://doaj.org/article/c3948fc85ca745dd897200af18562920","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"npj Digital Medicine, Vol 7, Iss 1, Pp 1-12 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41746-024-01411-2","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-024-01411-2","pdf_url":"https://www.nature.com/articles/s41746-024-01411-2.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6740839966","display_name":null,"funder_award_id":"62201483","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6801074206","display_name":"Research and Development of an AI-enhanced System for Whole Slide Histopathology Image: Quantitative Assessment, Assisted Diagnosis and Prognostic Evaluation","funder_award_id":"ITS/274/22","funder_id":"https://openalex.org/F4320326427","funder_display_name":"Innovation and Technology Fund"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326427","display_name":"Innovation and Technology Fund","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405887088.pdf","grobid_xml":"https://content.openalex.org/works/W4405887088.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1975244495","https://openalex.org/W2052137476","https://openalex.org/W2101979288","https://openalex.org/W2194775991","https://openalex.org/W2302302587","https://openalex.org/W2620102808","https://openalex.org/W2760946358","https://openalex.org/W2889377217","https://openalex.org/W2952846726","https://openalex.org/W2956228567","https://openalex.org/W2964275459","https://openalex.org/W2971376088","https://openalex.org/W2986297814","https://openalex.org/W2995948556","https://openalex.org/W3033382446","https://openalex.org/W3043535018","https://openalex.org/W3104135675","https://openalex.org/W3135367836","https://openalex.org/W3135547872","https://openalex.org/W3138973186","https://openalex.org/W3175126073","https://openalex.org/W3176719058","https://openalex.org/W3198377975","https://openalex.org/W3205802794","https://openalex.org/W3211647829","https://openalex.org/W3216823025","https://openalex.org/W4245996757","https://openalex.org/W4281257868","https://openalex.org/W4283801948","https://openalex.org/W4288809219","https://openalex.org/W4293861233","https://openalex.org/W4312468136","https://openalex.org/W4313065529","https://openalex.org/W4327545654","https://openalex.org/W4362661579","https://openalex.org/W4381573401","https://openalex.org/W4385948838","https://openalex.org/W4386071624","https://openalex.org/W4386075969","https://openalex.org/W4386076092","https://openalex.org/W4386790226","https://openalex.org/W4387744047","https://openalex.org/W4390872395","https://openalex.org/W4392947532","https://openalex.org/W4399567248","https://openalex.org/W4400455704"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W4229853287","https://openalex.org/W1462775415","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Due":[0],"to":[1,37,62,70,90,102],"the":[2,109,114,119,143],"large":[3],"size":[4],"and":[5,44,49,80,129],"lack":[6],"of":[7,86,121,145],"fine-grained":[8],"annotation,":[9],"Whole":[10],"Slide":[11],"Images":[12],"(WSIs)":[13],"analysis":[14],"is":[15],"commonly":[16],"approached":[17],"as":[18,113],"a":[19,34,54,84],"Multiple":[20],"Instance":[21],"Learning":[22],"(MIL)":[23],"problem.":[24],"However,":[25],"previous":[26,138],"studies":[27],"only":[28],"learn":[29],"from":[30,77,94],"training":[31,95],"data,":[32],"posing":[33],"stark":[35],"contrast":[36],"how":[38],"human":[39,74,146],"clinicians":[40],"teach":[41],"each":[42],"other":[43],"reason":[45],"about":[46],"histopathologic":[47],"entities":[48],"factors.":[50],"Here,":[51],"we":[52],"present":[53],"novel":[55],"knowledge":[56,93,105],"concept-based":[57],"MIL":[58],"framework,":[59],"named":[60],"ConcepPath,":[61,98],"fill":[63],"this":[64],"gap.":[65],"Specifically,":[66],"ConcepPath":[67,135],"utilizes":[68],"GPT-4":[69],"induce":[71],"reliable":[72],"disease-specific":[73],"expert":[75,147],"concepts":[76,89,106],"medical":[78],"literature":[79],"incorporate":[81],"them":[82],"with":[83],"group":[85],"purely":[87],"learnable":[88],"extract":[91],"complementary":[92],"data.":[96],"In":[97,118],"WSIs":[99],"are":[100],"aligned":[101],"these":[103],"linguistic":[104],"by":[107],"utilizing":[108],"pathology":[110],"vision-language":[111],"model":[112],"basic":[115],"building":[116],"component.":[117],"application":[120],"lung":[122],"cancer":[123,126,131],"subtyping,":[124],"breast":[125],"HER2":[127],"scoring,":[128],"gastric":[130],"immunotherapy-sensitive":[132],"subtyping":[133],"tasks,":[134],"significantly":[136],"outperformed":[137],"SOTA":[139],"methods,":[140],"which":[141],"lacked":[142],"guidance":[144],"knowledge.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":6}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
