{"id":"https://openalex.org/W4385064016","doi":"https://doi.org/10.1038/s41746-023-00878-9","title":"The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era","display_name":"The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era","publication_year":2023,"publication_date":"2023-07-21","ids":{"openalex":"https://openalex.org/W4385064016","doi":"https://doi.org/10.1038/s41746-023-00878-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/37479735"},"language":"en","primary_location":{"id":"doi:10.1038/s41746-023-00878-9","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-023-00878-9","pdf_url":"https://www.nature.com/articles/s41746-023-00878-9.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41746-023-00878-9.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003128469","display_name":"Andrew Wen","orcid":"https://orcid.org/0000-0001-9090-8028"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Wen","raw_affiliation_strings":["Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","Department of AI & Informatics, Mayo Clinic, Rochester, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA"],"raw_orcid":"https://orcid.org/0000-0001-9090-8028","affiliations":[{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I4210146710"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013043483","display_name":"Huan He","orcid":"https://orcid.org/0000-0003-1312-4195"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huan He","raw_affiliation_strings":["Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","Department of AI & Informatics, Mayo Clinic, Rochester, USA"],"raw_orcid":"https://orcid.org/0000-0003-1312-4195","affiliations":[{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032226587","display_name":"Sunyang Fu","orcid":"https://orcid.org/0000-0003-1691-5179"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sunyang Fu","raw_affiliation_strings":["Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","Department of AI & Informatics, Mayo Clinic, Rochester, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I4210146710"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100321835","display_name":"Sijia Liu","orcid":"https://orcid.org/0000-0001-9763-1164"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sijia Liu","raw_affiliation_strings":["Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","Department of AI & Informatics, Mayo Clinic, Rochester, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007441056","display_name":"Kurt Miller","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kurt Miller","raw_affiliation_strings":["Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","Department of AI & Informatics, Mayo Clinic, Rochester, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406711","display_name":"Liwei Wang","orcid":"https://orcid.org/0000-0001-9970-8604"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liwei Wang","raw_affiliation_strings":["Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","Department of AI & Informatics, Mayo Clinic, Rochester, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I4210146710"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046709245","display_name":"Kirk Roberts","orcid":"https://orcid.org/0000-0001-6525-5213"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kirk E. Roberts","raw_affiliation_strings":["School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA"],"raw_orcid":"https://orcid.org/0000-0001-6525-5213","affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044068445","display_name":"Steven Bedrick","orcid":"https://orcid.org/0000-0002-0163-9397"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven D. Bedrick","raw_affiliation_strings":["Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 97239, USA","Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA"],"raw_orcid":"https://orcid.org/0000-0002-0163-9397","affiliations":[{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 97239, USA","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001422310","display_name":"William Hersh","orcid":"https://orcid.org/0000-0002-4114-5148"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William R. Hersh","raw_affiliation_strings":["Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 97239, USA","Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, 97239, USA","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I4210159031","display_name":"The University of Texas Health Science Center","ror":"https://ror.org/05cwbxa29","country_code":"US","type":"education","lineage":["https://openalex.org/I4210159031"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA. Hongfang.Liu@uth.tmc.edu","School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA. Hongfang.Liu@uth.tmc.edu","Department of AI & Informatics, Mayo Clinic, Rochester, USA","School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, MN, 55905, USA. Hongfang.Liu@uth.tmc.edu","institution_ids":["https://openalex.org/I4210125099","https://openalex.org/I4210146710"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, 77030, USA. Hongfang.Liu@uth.tmc.edu","institution_ids":["https://openalex.org/I4210159031","https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of AI & Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center, Houston, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101585391"],"corresponding_institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210125099","https://openalex.org/I4210146710","https://openalex.org/I4210159031","https://openalex.org/I919571938"],"apc_list":{"value":3590,"currency":"USD","value_usd":3590},"apc_paid":{"value":3590,"currency":"USD","value_usd":3590},"fwci":0.275,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.50710243,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":97},"biblio":{"volume":"6","issue":"1","first_page":"132","last_page":"132"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10582","display_name":"Ethics in Clinical Research","score":0.9699000120162964,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8469071388244629},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7406584024429321},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7346660494804382},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.69813472032547},{"id":"https://openalex.org/keywords/reusability","display_name":"Reusability","score":0.6037004590034485},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5934056639671326},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.45838847756385803},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3949037790298462},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39085838198661804},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.33394068479537964},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.16400480270385742},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1395569145679474},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10783225297927856},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09484130144119263},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08934623003005981},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.08825600147247314}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8469071388244629},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7406584024429321},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7346660494804382},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.69813472032547},{"id":"https://openalex.org/C137981799","wikidata":"https://www.wikidata.org/wiki/Q1369184","display_name":"Reusability","level":3,"score":0.6037004590034485},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5934056639671326},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.45838847756385803},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3949037790298462},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39085838198661804},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.33394068479537964},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.16400480270385742},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1395569145679474},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10783225297927856},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09484130144119263},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08934623003005981},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.08825600147247314},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1038/s41746-023-00878-9","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-023-00878-9","pdf_url":"https://www.nature.com/articles/s41746-023-00878-9.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},{"id":"pmid:37479735","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37479735","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NPJ digital medicine","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10362064","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10362064","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10362064/pdf/41746_2023_Article_878.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"NPJ Digit Med","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1164","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/164","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:330493cb0c304bbaafe06d8d67bec2ae","is_oa":true,"landing_page_url":"https://doaj.org/article/330493cb0c304bbaafe06d8d67bec2ae","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"npj Digital Medicine, Vol 6, Iss 1, Pp 1-8 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41746-023-00878-9","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-023-00878-9","pdf_url":"https://www.nature.com/articles/s41746-023-00878-9.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.46000000834465027,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G287445649","display_name":null,"funder_award_id":"#U01TR002062","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G4789247823","display_name":"Open Health Natural Language Processing Collaboratory","funder_award_id":"5u01tr002062-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G541000183","display_name":null,"funder_award_id":"R01-LM011934","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5777354295","display_name":null,"funder_award_id":"R01LM011934","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G6110878592","display_name":"Semi-structured Information Retrieval in Clinical Text for Cohort Identification","funder_award_id":"7r01lm011934-08","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7668720476","display_name":null,"funder_award_id":"U01TR002062","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G786090191","display_name":"Semi-structured Information Retrieval in Clinical Text for Cohort Identification","funder_award_id":"2r01lm011934-06a1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320306143","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4385064016.pdf","grobid_xml":"https://content.openalex.org/works/W4385064016.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W15289527","https://openalex.org/W34678172","https://openalex.org/W86609720","https://openalex.org/W1446829270","https://openalex.org/W1502865770","https://openalex.org/W1561070017","https://openalex.org/W1982059951","https://openalex.org/W2005545412","https://openalex.org/W2019898305","https://openalex.org/W2063613784","https://openalex.org/W2066578320","https://openalex.org/W2077541161","https://openalex.org/W2096252540","https://openalex.org/W2123803128","https://openalex.org/W2130755479","https://openalex.org/W2131801584","https://openalex.org/W2133974927","https://openalex.org/W2138239858","https://openalex.org/W2140796896","https://openalex.org/W2146089916","https://openalex.org/W2151068025","https://openalex.org/W2151868700","https://openalex.org/W2159583324","https://openalex.org/W2165067209","https://openalex.org/W2516351633","https://openalex.org/W2604410201","https://openalex.org/W2768488789","https://openalex.org/W2770445088","https://openalex.org/W2791942584","https://openalex.org/W2808129629","https://openalex.org/W2873028792","https://openalex.org/W2902802452","https://openalex.org/W2911661483","https://openalex.org/W2912300176","https://openalex.org/W2980488626","https://openalex.org/W2981869278","https://openalex.org/W2995349381","https://openalex.org/W3013721505","https://openalex.org/W3043082460","https://openalex.org/W3045889620","https://openalex.org/W3048179169","https://openalex.org/W3091869825","https://openalex.org/W3095585365","https://openalex.org/W3103895001","https://openalex.org/W3152661589","https://openalex.org/W3153938616","https://openalex.org/W3161428478","https://openalex.org/W3170210531","https://openalex.org/W4223468055","https://openalex.org/W4240422607","https://openalex.org/W4252076394","https://openalex.org/W4286377178","https://openalex.org/W4307224186","https://openalex.org/W6630034250"],"related_works":["https://openalex.org/W2215606090","https://openalex.org/W2394142092","https://openalex.org/W2357461155","https://openalex.org/W2384129116","https://openalex.org/W2354251581","https://openalex.org/W2131591406","https://openalex.org/W2766721049","https://openalex.org/W3145924829","https://openalex.org/W2384224704","https://openalex.org/W3007824595"],"abstract_inverted_index":{"Clinical":[0],"phenotyping":[1,51,60,77,99,147],"is":[2,25],"often":[3,26],"a":[4,27,58,64,82,107,131,135],"foundational":[5],"requirement":[6],"for":[7,11,81],"obtaining":[8],"datasets":[9],"necessary":[10],"the":[12,92,95,104,145],"development":[13,30,52,149],"of":[14,66,85,97,106,109,117,127,139],"digital":[15],"health":[16],"applications.":[17],"Traditionally":[18],"done":[19],"via":[20,45],"manual":[21],"abstraction,":[22],"this":[23,43],"task":[24,44,61],"bottleneck":[28],"in":[29,41,63,103],"due":[31],"to":[32,54,94],"time":[33],"and":[34,100,143],"cost":[35],"requirements,":[36],"therefore":[37],"raising":[38],"significant":[39],"interest":[40],"accomplishing":[42],"in-silico":[46,50,72,76,98],"means.":[47],"Nevertheless,":[48],"current":[49],"tends":[53],"be":[55],"focused":[56],"on":[57,137],"single":[59],"resulting":[62],"dearth":[65],"reusable":[67],"tools":[68],"supporting":[69],"cross-task":[70,141],"generalizable":[71],"phenotyping.":[73],"In":[74,120],"addition,":[75,121],"remains":[78],"largely":[79],"inaccessible":[80],"substantial":[83],"portion":[84],"potentially":[86],"interested":[87],"users.":[88],"Here,":[89],"we":[90,122],"highlight":[91],"barriers":[93],"usage":[96],"potential":[101],"solutions":[102],"form":[105],"framework":[108,129],"several":[110],"desiderata":[111],"as":[112,130],"observed":[113],"during":[114],"our":[115],"implementation":[116,126],"such":[118],"tasks.":[119],"introduce":[123],"an":[124],"example":[125],"said":[128],"software":[132],"application,":[133],"with":[134],"focus":[136],"ease":[138],"adoption,":[140],"reusability,":[142],"facilitating":[144],"clinical":[146],"algorithm":[148],"process.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
