{"id":"https://openalex.org/W2892252638","doi":"https://doi.org/10.1038/s41746-018-0057-x","title":"A principled machine learning framework improves accuracy of stage II colorectal cancer prognosis","display_name":"A principled machine learning framework improves accuracy of stage II colorectal cancer prognosis","publication_year":2018,"publication_date":"2018-09-21","ids":{"openalex":"https://openalex.org/W2892252638","doi":"https://doi.org/10.1038/s41746-018-0057-x","mag":"2892252638","pmid":"https://pubmed.ncbi.nlm.nih.gov/31304331"},"language":"en","primary_location":{"id":"doi:10.1038/s41746-018-0057-x","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-018-0057-x","pdf_url":"https://www.nature.com/articles/s41746-018-0057-x.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41746-018-0057-x.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012330365","display_name":"Neofytos Dimitriou","orcid":"https://orcid.org/0000-0002-2328-6502"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Neofytos Dimitriou","raw_affiliation_strings":["1School of Computer Science, University of St Andrews, St Andrews, KY16 9SX UK","School of Computer Science, University of St Andrews, St Andrews, KY16 9SX, UK"],"affiliations":[{"raw_affiliation_string":"1School of Computer Science, University of St Andrews, St Andrews, KY16 9SX UK","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, University of St Andrews, St Andrews, KY16 9SX, UK","institution_ids":["https://openalex.org/I16835326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020799762","display_name":"Ognjen Arandjelovi\u0107","orcid":"https://orcid.org/0000-0002-9314-194X"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ognjen Arandjelovi\u0107","raw_affiliation_strings":["1School of Computer Science, University of St Andrews, St Andrews, KY16 9SX UK","School of Computer Science, University of St Andrews, St Andrews, KY16 9SX, UK"],"affiliations":[{"raw_affiliation_string":"1School of Computer Science, University of St Andrews, St Andrews, KY16 9SX UK","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, University of St Andrews, St Andrews, KY16 9SX, UK","institution_ids":["https://openalex.org/I16835326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064922783","display_name":"David J. Harrison","orcid":"https://orcid.org/0000-0001-9041-9988"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David J. Harrison","raw_affiliation_strings":["2School of Medicine, University of St Andrews, St Andrews, KY16 9TF UK","School of Medicine, University of St Andrews, St Andrews, KY16 9TF, UK"],"affiliations":[{"raw_affiliation_string":"2School of Medicine, University of St Andrews, St Andrews, KY16 9TF UK","institution_ids":[]},{"raw_affiliation_string":"School of Medicine, University of St Andrews, St Andrews, KY16 9TF, UK","institution_ids":["https://openalex.org/I16835326"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066722357","display_name":"Peter D. Caie","orcid":"https://orcid.org/0000-0002-0031-9850"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter D. Caie","raw_affiliation_strings":["2School of Medicine, University of St Andrews, St Andrews, KY16 9TF UK","School of Medicine, University of St Andrews, St Andrews, KY16 9TF, UK"],"affiliations":[{"raw_affiliation_string":"2School of Medicine, University of St Andrews, St Andrews, KY16 9TF UK","institution_ids":[]},{"raw_affiliation_string":"School of Medicine, University of St Andrews, St Andrews, KY16 9TF, UK","institution_ids":["https://openalex.org/I16835326"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5012330365"],"corresponding_institution_ids":["https://openalex.org/I16835326"],"apc_list":{"value":3060,"currency":"USD","value_usd":3060},"apc_paid":{"value":3060,"currency":"USD","value_usd":3060},"fwci":6.4306,"has_fulltext":true,"cited_by_count":65,"citation_normalized_percentile":{"value":0.9722773,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"1","issue":"1","first_page":"52","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11067","display_name":"Colorectal Cancer Treatments and Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.7701117992401123},{"id":"https://openalex.org/keywords/stage","display_name":"Stage (stratigraphy)","score":0.695128321647644},{"id":"https://openalex.org/keywords/cohort","display_name":"Cohort","score":0.6643385291099548},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.629953145980835},{"id":"https://openalex.org/keywords/pathological","display_name":"Pathological","score":0.5609219074249268},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5547755360603333},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.47602608799934387},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46122652292251587},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4508599042892456},{"id":"https://openalex.org/keywords/outcome","display_name":"Outcome (game theory)","score":0.4256497621536255},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.3739696145057678},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.281427800655365},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.26364126801490784}],"concepts":[{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.7701117992401123},{"id":"https://openalex.org/C146357865","wikidata":"https://www.wikidata.org/wiki/Q1123245","display_name":"Stage (stratigraphy)","level":2,"score":0.695128321647644},{"id":"https://openalex.org/C72563966","wikidata":"https://www.wikidata.org/wiki/Q1303415","display_name":"Cohort","level":2,"score":0.6643385291099548},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.629953145980835},{"id":"https://openalex.org/C207886595","wikidata":"https://www.wikidata.org/wiki/Q1456138","display_name":"Pathological","level":2,"score":0.5609219074249268},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5547755360603333},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.47602608799934387},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46122652292251587},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4508599042892456},{"id":"https://openalex.org/C148220186","wikidata":"https://www.wikidata.org/wiki/Q7111912","display_name":"Outcome (game theory)","level":2,"score":0.4256497621536255},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3739696145057678},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.281427800655365},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.26364126801490784},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C144237770","wikidata":"https://www.wikidata.org/wiki/Q747534","display_name":"Mathematical economics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1038/s41746-018-0057-x","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-018-0057-x","pdf_url":"https://www.nature.com/articles/s41746-018-0057-x.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},{"id":"pmid:31304331","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31304331","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NPJ digital medicine","raw_type":null},{"id":"pmh:oai:doaj.org/article:89e100e849c14b12b09636de204ca3f0","is_oa":true,"landing_page_url":"https://doaj.org/article/89e100e849c14b12b09636de204ca3f0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"npj Digital Medicine, Vol 1, Iss 1, Pp 1-9 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5586799","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6550189","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:research-repository.st-andrews.ac.uk:10023/16174","is_oa":true,"landing_page_url":"https://hdl.handle.net/10023/16174","pdf_url":null,"source":{"id":"https://openalex.org/S4306400230","display_name":"St Andrews Research Repository (St Andrews Research Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16835326","host_organization_name":"University of St Andrews","host_organization_lineage":["https://openalex.org/I16835326"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1038/s41746-018-0057-x","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41746-018-0057-x","pdf_url":"https://www.nature.com/articles/s41746-018-0057-x.pdf","source":{"id":"https://openalex.org/S4210195431","display_name":"npj Digital Medicine","issn_l":"2398-6352","issn":["2398-6352"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"npj Digital Medicine","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2892252638.pdf","grobid_xml":"https://content.openalex.org/works/W2892252638.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W60686164","https://openalex.org/W1501626351","https://openalex.org/W1514907448","https://openalex.org/W1517389415","https://openalex.org/W1680392829","https://openalex.org/W1757407923","https://openalex.org/W1816484687","https://openalex.org/W1822255859","https://openalex.org/W1859257957","https://openalex.org/W1972633746","https://openalex.org/W1973216217","https://openalex.org/W1982734301","https://openalex.org/W1985213644","https://openalex.org/W2006316366","https://openalex.org/W2014915963","https://openalex.org/W2019605179","https://openalex.org/W2022299517","https://openalex.org/W2024060087","https://openalex.org/W2033751993","https://openalex.org/W2042283860","https://openalex.org/W2046089103","https://openalex.org/W2051056135","https://openalex.org/W2061349954","https://openalex.org/W2069109870","https://openalex.org/W2080572026","https://openalex.org/W2097998348","https://openalex.org/W2100125385","https://openalex.org/W2103243046","https://openalex.org/W2104892085","https://openalex.org/W2106411961","https://openalex.org/W2108067681","https://openalex.org/W2113286221","https://openalex.org/W2114401973","https://openalex.org/W2138153168","https://openalex.org/W2147680128","https://openalex.org/W2148633389","https://openalex.org/W2159352894","https://openalex.org/W2167101736","https://openalex.org/W2442400524","https://openalex.org/W2461138379","https://openalex.org/W2586695017","https://openalex.org/W2594760301","https://openalex.org/W2597872842","https://openalex.org/W2604318649","https://openalex.org/W2604857886","https://openalex.org/W2607439980","https://openalex.org/W2611219815","https://openalex.org/W2621948389","https://openalex.org/W2747483097","https://openalex.org/W2749170701","https://openalex.org/W2755243300","https://openalex.org/W2761290139","https://openalex.org/W2779273646","https://openalex.org/W2781526984","https://openalex.org/W3099665739","https://openalex.org/W4211199921","https://openalex.org/W4247588228","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2978999882","https://openalex.org/W2365243064","https://openalex.org/W2153369162","https://openalex.org/W2181392282","https://openalex.org/W2119369480","https://openalex.org/W3141031773","https://openalex.org/W1595686156","https://openalex.org/W2386699790","https://openalex.org/W2503350049","https://openalex.org/W2410006919"],"abstract_inverted_index":{"Accurate":[0],"prognosis":[1],"is":[2,42,63,126],"fundamental":[3],"in":[4,102,105],"planning":[5],"an":[6],"appropriate":[7],"therapy":[8],"for":[9],"cancer":[10,50,134],"patients.":[11,135],"Consequent":[12],"to":[13,64],"the":[14,17,24,53,60,69],"heterogeneity":[15],"of":[16,27,59,71,85,89,92,114,131],"disease,":[18],"intra-":[19],"and":[20,23,125],"inter-pathologist":[21],"variability,":[22],"inherent":[25],"limitations":[26],"current":[28,54,115],"pathological":[29],"reporting":[30],"systems,":[31],"patient":[32,39],"outcome":[33],"varies":[34],"considerably":[35],"within":[36],"similarly":[37],"staged":[38],"cohorts.":[40],"This":[41],"particularly":[43],"true":[44],"when":[45],"classifying":[46],"stage":[47,106,121],"II":[48,107],"colorectal":[49,133],"patients":[51,108],"using":[52],"TNM":[55],"guidelines.":[56],"The":[57],"aim":[58],"present":[61],"work":[62],"address":[65],"this":[66],"problem":[67],"through":[68],"use":[70,84],"machine":[72],"learning.":[73],"In":[74],"particular,":[75],"we":[76],"introduce":[77],"a":[78,86,129],"data":[79],"driven":[80],"framework":[81],"which":[82],"makes":[83],"large":[87],"number":[88],"diverse":[90],"types":[91],"features,":[93],"readily":[94],"collected":[95],"from":[96],"immunofluorescence":[97],"imagery.":[98],"Its":[99],"outstanding":[100],"performance":[101],"predicting":[103],"mortality":[104],"(AUROC":[109,122],"=":[110,123],"0:94),":[111],"exceeds":[112],"that":[113],"clinical":[116],"guidelines":[117],"such":[118],"as":[119],"pT":[120],"0:65),":[124],"demonstrated":[127],"on":[128],"cohort":[130],"173":[132]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
