{"id":"https://openalex.org/W1596929908","doi":"https://doi.org/10.1023/a:1008158231558","title":"Deciphering common failures in molecular docking of ligand-protein complexes","display_name":"Deciphering common failures in molecular docking of ligand-protein complexes","publication_year":2000,"publication_date":"2000-11-01","ids":{"openalex":"https://openalex.org/W1596929908","doi":"https://doi.org/10.1023/a:1008158231558","mag":"1596929908","pmid":"https://pubmed.ncbi.nlm.nih.gov/11131967"},"language":"en","primary_location":{"id":"doi:10.1023/a:1008158231558","is_oa":false,"landing_page_url":"https://doi.org/10.1023/a:1008158231558","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031922505","display_name":"Gennady M. Verkhivker","orcid":"https://orcid.org/0000-0002-4507-4471"},"institutions":[{"id":"https://openalex.org/I4210166547","display_name":"Agouron Institute","ror":"https://ror.org/05vmwhp17","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210166547"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gennady M. Verkhivker","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc, A Warner-Lambert Company, San Diego, CA 92121-1111, USA. verk@agouron.com","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc, A Warner-Lambert Company, San Diego, CA 92121-1111, USA. verk@agouron.com","institution_ids":["https://openalex.org/I4210166547"]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022251743","display_name":"Djamal Bouzida","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Djamal Bouzida","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078102848","display_name":"Daniel K. Gehlhaar","orcid":"https://orcid.org/0000-0002-7462-5519"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel K. Gehlhaar","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091310917","display_name":"Paul A. Rejto","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paul A. Rejto","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057906054","display_name":"Sandra Arthurs","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sandra Arthurs","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055442360","display_name":"Anthony B. Colson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anthony B. Colson","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105775221","display_name":"Stephan T. Freer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stephan T. Freer","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022637001","display_name":"Veda Larson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Veda Larson","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065795298","display_name":"Brock A. Luty","orcid":"https://orcid.org/0000-0003-0486-8352"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brock A. Luty","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069543727","display_name":"Tami Marrone","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tami Marrone","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070583038","display_name":"Peter W. Rose","orcid":"https://orcid.org/0000-0001-9981-9750"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peter W. Rose","raw_affiliation_strings":["Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","Agouron Pharmaceuticals, Inc., San Diego, U.S.A"],"affiliations":[{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., 10777 Science Center Drive, San Diego, CA, 92121-1111, U.S.A","institution_ids":[]},{"raw_affiliation_string":"Agouron Pharmaceuticals, Inc., San Diego, U.S.A","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5031922505"],"corresponding_institution_ids":["https://openalex.org/I4210166547"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":11.2428,"has_fulltext":false,"cited_by_count":239,"citation_normalized_percentile":{"value":0.98884786,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"14","issue":"8","first_page":"731","last_page":"751"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.788347601890564},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5519235134124756},{"id":"https://openalex.org/keywords/searching-the-conformational-space-for-docking","display_name":"Searching the conformational space for docking","score":0.5403506755828857},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.5334669947624207},{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.5312554240226746},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.49970006942749023},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.4996373653411865},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.4784434139728546},{"id":"https://openalex.org/keywords/crystal-structure","display_name":"Crystal structure","score":0.4530108869075775},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.4349738359451294},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4268287420272827},{"id":"https://openalex.org/keywords/binding-energy","display_name":"Binding energy","score":0.4118247330188751},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.39927420020103455},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.38550230860710144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3128190040588379},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2387111485004425},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14143085479736328},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09405416250228882},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08906647562980652},{"id":"https://openalex.org/keywords/atomic-physics","display_name":"Atomic physics","score":0.08386820554733276},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.08087033033370972},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.07303568720817566}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.788347601890564},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5519235134124756},{"id":"https://openalex.org/C44695244","wikidata":"https://www.wikidata.org/wiki/Q7441727","display_name":"Searching the conformational space for docking","level":3,"score":0.5403506755828857},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.5334669947624207},{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.5312554240226746},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.49970006942749023},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.4996373653411865},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.4784434139728546},{"id":"https://openalex.org/C115624301","wikidata":"https://www.wikidata.org/wiki/Q895901","display_name":"Crystal structure","level":2,"score":0.4530108869075775},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.4349738359451294},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4268287420272827},{"id":"https://openalex.org/C93282013","wikidata":"https://www.wikidata.org/wiki/Q420754","display_name":"Binding energy","level":2,"score":0.4118247330188751},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.39927420020103455},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.38550230860710144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3128190040588379},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2387111485004425},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14143085479736328},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09405416250228882},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08906647562980652},{"id":"https://openalex.org/C184779094","wikidata":"https://www.wikidata.org/wiki/Q26383","display_name":"Atomic physics","level":1,"score":0.08386820554733276},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.08087033033370972},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.07303568720817566},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003461","descriptor_name":"Crystallography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003461","descriptor_name":"Crystallography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003461","descriptor_name":"Crystallography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005964","descriptor_name":"Glucosyltransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005964","descriptor_name":"Glucosyltransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005964","descriptor_name":"Glucosyltransferases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005964","descriptor_name":"Glucosyltransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005964","descriptor_name":"Glucosyltransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005964","descriptor_name":"Glucosyltransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008320","descriptor_name":"Maltose","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008320","descriptor_name":"Maltose","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008320","descriptor_name":"Maltose","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008320","descriptor_name":"Maltose","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008320","descriptor_name":"Maltose","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008320","descriptor_name":"Maltose","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1023/a:1008158231558","is_oa":false,"landing_page_url":"https://doi.org/10.1023/a:1008158231558","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:11131967","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11131967","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.131.6271","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.131.6271","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.duke.edu/~brd/Teaching/Bio/asmb/current/Papers/Lit4Docking/MistakeDocking.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8999999761581421,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":101,"referenced_works":["https://openalex.org/W91590273","https://openalex.org/W178319085","https://openalex.org/W1484101819","https://openalex.org/W1570889609","https://openalex.org/W1581848649","https://openalex.org/W1584189892","https://openalex.org/W1587930565","https://openalex.org/W1606468471","https://openalex.org/W1858789161","https://openalex.org/W1874531505","https://openalex.org/W1964167423","https://openalex.org/W1969130197","https://openalex.org/W1976106600","https://openalex.org/W1977467384","https://openalex.org/W1978842345","https://openalex.org/W1978885914","https://openalex.org/W1979046104","https://openalex.org/W1980359542","https://openalex.org/W1983435932","https://openalex.org/W1983628095","https://openalex.org/W1985953075","https://openalex.org/W1988774285","https://openalex.org/W1990137109","https://openalex.org/W1994067196","https://openalex.org/W1994932923","https://openalex.org/W1995875735","https://openalex.org/W1996530068","https://openalex.org/W1998791246","https://openalex.org/W1998972953","https://openalex.org/W1999968212","https://openalex.org/W2002664623","https://openalex.org/W2007967705","https://openalex.org/W2010191623","https://openalex.org/W2010207715","https://openalex.org/W2012519948","https://openalex.org/W2013792107","https://openalex.org/W2014095962","https://openalex.org/W2015033725","https://openalex.org/W2021233158","https://openalex.org/W2021411698","https://openalex.org/W2023940675","https://openalex.org/W2024243556","https://openalex.org/W2024331611","https://openalex.org/W2035695854","https://openalex.org/W2036835637","https://openalex.org/W2037026704","https://openalex.org/W2039237094","https://openalex.org/W2041189078","https://openalex.org/W2042071104","https://openalex.org/W2042071940","https://openalex.org/W2043429268","https://openalex.org/W2044398121","https://openalex.org/W2044834685","https://openalex.org/W2045550557","https://openalex.org/W2049118022","https://openalex.org/W2050456292","https://openalex.org/W2051039246","https://openalex.org/W2058640536","https://openalex.org/W2060100446","https://openalex.org/W2060452154","https://openalex.org/W2064471782","https://openalex.org/W2067872997","https://openalex.org/W2073082810","https://openalex.org/W2076805087","https://openalex.org/W2084266282","https://openalex.org/W2085822586","https://openalex.org/W2090282432","https://openalex.org/W2090650446","https://openalex.org/W2094624643","https://openalex.org/W2097121170","https://openalex.org/W2100627460","https://openalex.org/W2102026362","https://openalex.org/W2102537419","https://openalex.org/W2110681410","https://openalex.org/W2111183262","https://openalex.org/W2111767148","https://openalex.org/W2112154906","https://openalex.org/W2112903372","https://openalex.org/W2113030357","https://openalex.org/W2114779636","https://openalex.org/W2114899912","https://openalex.org/W2116033626","https://openalex.org/W2116712176","https://openalex.org/W2123166384","https://openalex.org/W2125696348","https://openalex.org/W2128653234","https://openalex.org/W2129157803","https://openalex.org/W2132709044","https://openalex.org/W2136061992","https://openalex.org/W2143523184","https://openalex.org/W2149331394","https://openalex.org/W2153731681","https://openalex.org/W2154151185","https://openalex.org/W2165890129","https://openalex.org/W2166430425","https://openalex.org/W2171755502","https://openalex.org/W2912394645","https://openalex.org/W3104163644","https://openalex.org/W4235939487","https://openalex.org/W4252192031","https://openalex.org/W4296588184"],"related_works":["https://openalex.org/W1992786240","https://openalex.org/W4235673852","https://openalex.org/W4213013656","https://openalex.org/W4246463539","https://openalex.org/W4310018788","https://openalex.org/W2037320233","https://openalex.org/W1974422922","https://openalex.org/W1997409847","https://openalex.org/W2058311929","https://openalex.org/W4309353019"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
