{"id":"https://openalex.org/W1593176674","doi":"https://doi.org/10.1023/a:1008014604433","title":"Comparison of two implementations of the incremental construction algorithm in flexible docking of thrombin inhibitors","display_name":"Comparison of two implementations of the incremental construction algorithm in flexible docking of thrombin inhibitors","publication_year":1999,"publication_date":"1999-03-01","ids":{"openalex":"https://openalex.org/W1593176674","doi":"https://doi.org/10.1023/a:1008014604433","mag":"1593176674","pmid":"https://pubmed.ncbi.nlm.nih.gov/10091122"},"language":"en","primary_location":{"id":"doi:10.1023/a:1008014604433","is_oa":false,"landing_page_url":"https://doi.org/10.1023/a:1008014604433","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071642924","display_name":"Ronald M. A. Knegtel","orcid":"https://orcid.org/0000-0002-7192-3174"},"institutions":[{"id":"https://openalex.org/I2799319725","display_name":"Organisation for the Prohibition of Chemical Weapons","ror":"https://ror.org/02rqftv84","country_code":"NL","type":"government","lineage":["https://openalex.org/I2799319725"]},{"id":"https://openalex.org/I4210110503","display_name":"SNV Netherlands Development Organisation","ror":"https://ror.org/01a4v4q66","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210110503"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ronald M.A. Knegtel","raw_affiliation_strings":["Department of Molecular Design and Informatics, N.V. Organon, The Netherlands","Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Design and Informatics, N.V. Organon, The Netherlands","institution_ids":["https://openalex.org/I2799319725"]},{"raw_affiliation_string":"Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands","institution_ids":["https://openalex.org/I4210110503"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045319813","display_name":"Denis M. Bayada","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110503","display_name":"SNV Netherlands Development Organisation","ror":"https://ror.org/01a4v4q66","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210110503"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Denis M. Bayada","raw_affiliation_strings":["Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands","institution_ids":["https://openalex.org/I4210110503"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063901716","display_name":"Richard A. Engh","orcid":"https://orcid.org/0000-0002-6207-0560"},"institutions":[{"id":"https://openalex.org/I4210110503","display_name":"SNV Netherlands Development Organisation","ror":"https://ror.org/01a4v4q66","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210110503"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Richard A. Engh","raw_affiliation_strings":["Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands","institution_ids":["https://openalex.org/I4210110503"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067173348","display_name":"Wolfgang von der Saal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wolfgang von der Saal","raw_affiliation_strings":["Boehringer Mannheim GmbH, Mannheim, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boehringer Mannheim GmbH, Mannheim, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025695891","display_name":"V. J. van Geerestein","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110503","display_name":"SNV Netherlands Development Organisation","ror":"https://ror.org/01a4v4q66","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210110503"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Vincent J. van Geerestein","raw_affiliation_strings":["Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands","institution_ids":["https://openalex.org/I4210110503"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027269456","display_name":"Peter D. J. Grootenhuis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110503","display_name":"SNV Netherlands Development Organisation","ror":"https://ror.org/01a4v4q66","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I4210110503"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter D.J. Grootenhuis","raw_affiliation_strings":["Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Design and Informatics, N.V. Organon, Oss, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Design and Informatics, N. V. Organon, Oss, The Netherlands","institution_ids":["https://openalex.org/I4210110503"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":null,"fwci":5.5964,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.95680967,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":"2","first_page":"167","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9147999882698059,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.9377373456954956},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8687522411346436},{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.6823213696479797},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5500560402870178},{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.4169461727142334},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3703734874725342},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3397867679595947},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.09000599384307861},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.0835530161857605}],"concepts":[{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.9377373456954956},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8687522411346436},{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.6823213696479797},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5500560402870178},{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.4169461727142334},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3703734874725342},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3397867679595947},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.09000599384307861},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0835530161857605},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013917","descriptor_name":"Thrombin","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D013917","descriptor_name":"Thrombin","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D013917","descriptor_name":"Thrombin","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D013917","descriptor_name":"Thrombin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013917","descriptor_name":"Thrombin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013917","descriptor_name":"Thrombin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066298","descriptor_name":"In Vitro Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066298","descriptor_name":"In Vitro Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066298","descriptor_name":"In Vitro Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1023/a:1008014604433","is_oa":false,"landing_page_url":"https://doi.org/10.1023/a:1008014604433","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:10091122","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/10091122","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.8700000047683716}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W73918850","https://openalex.org/W1484101819","https://openalex.org/W1497740629","https://openalex.org/W1656114533","https://openalex.org/W1663611914","https://openalex.org/W1820009712","https://openalex.org/W1903998371","https://openalex.org/W1964478268","https://openalex.org/W1964958542","https://openalex.org/W1966041739","https://openalex.org/W1966473067","https://openalex.org/W1975773321","https://openalex.org/W1985953075","https://openalex.org/W1990137109","https://openalex.org/W1994067196","https://openalex.org/W1995379006","https://openalex.org/W1999118725","https://openalex.org/W1999968212","https://openalex.org/W2008517160","https://openalex.org/W2037730130","https://openalex.org/W2040026546","https://openalex.org/W2044876995","https://openalex.org/W2050456292","https://openalex.org/W2059864723","https://openalex.org/W2067455153","https://openalex.org/W2071529050","https://openalex.org/W2077583250","https://openalex.org/W2084266282","https://openalex.org/W2091646933","https://openalex.org/W2098622919","https://openalex.org/W2111767148","https://openalex.org/W2114779636","https://openalex.org/W2117197915","https://openalex.org/W2128170482","https://openalex.org/W2152629484","https://openalex.org/W2154151185","https://openalex.org/W2155524113","https://openalex.org/W2163910647","https://openalex.org/W2171234651","https://openalex.org/W2467071686","https://openalex.org/W2499833410","https://openalex.org/W2952115519","https://openalex.org/W4251139957","https://openalex.org/W4285719527","https://openalex.org/W4322696300","https://openalex.org/W6820025197"],"related_works":["https://openalex.org/W2167041509","https://openalex.org/W4282913408","https://openalex.org/W2100436540","https://openalex.org/W3033824302","https://openalex.org/W2300502530","https://openalex.org/W4310018788","https://openalex.org/W2766845742","https://openalex.org/W3201417569","https://openalex.org/W2058674645","https://openalex.org/W4322500885"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
