{"id":"https://openalex.org/W4412110320","doi":"https://doi.org/10.1021/acs.jcim.5c00530","title":"Deep Learning in Antimicrobial Peptide Prediction","display_name":"Deep Learning in Antimicrobial Peptide Prediction","publication_year":2025,"publication_date":"2025-07-08","ids":{"openalex":"https://openalex.org/W4412110320","doi":"https://doi.org/10.1021/acs.jcim.5c00530","pmid":"https://pubmed.ncbi.nlm.nih.gov/40626654"},"language":"en","primary_location":{"id":"doi:10.1021/acs.jcim.5c00530","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00530","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044799470","display_name":"Changhang Lin","orcid":"https://orcid.org/0000-0002-2477-0988"},"institutions":[{"id":"https://openalex.org/I111753288","display_name":"Fujian Normal University","ror":"https://ror.org/020azk594","country_code":"CN","type":"education","lineage":["https://openalex.org/I111753288"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CA","CN","MO"],"is_corresponding":false,"raw_author_name":"Changhang Lin","raw_affiliation_strings":["Faculty of Applied Sciences, Macao Polytechnic University, R. de Lu\u00eds Gonzaga Gomes, Macao 999078, China","Fujian Polytechnic Normal University","School of Big Data and Artificial Intelligence","School of Big Data and Artificial Intelligence, Fujian Polytechnic Normal University, Fuzhou 350300, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, R. de Lu\u00eds Gonzaga Gomes, Macao 999078, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"Fujian Polytechnic Normal University","institution_ids":["https://openalex.org/I111753288"]},{"raw_affiliation_string":"School of Big Data and Artificial Intelligence","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"School of Big Data and Artificial Intelligence, Fujian Polytechnic Normal University, Fuzhou 350300, China","institution_ids":["https://openalex.org/I111753288"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017707130","display_name":"Shuwen Xiong","orcid":"https://orcid.org/0000-0002-0935-9787"},"institutions":[{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Shuwen Xiong","raw_affiliation_strings":["Faculty of Applied Sciences, Macao Polytechnic University, R. de Lu\u00eds Gonzaga Gomes, Macao 999078, China"],"raw_orcid":"https://orcid.org/0000-0002-0935-9787","affiliations":[{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, R. de Lu\u00eds Gonzaga Gomes, Macao 999078, China","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061028143","display_name":"Feifei Cui","orcid":"https://orcid.org/0000-0001-7055-3813"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feifei Cui","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology","School of Computer Science and Technology, Hainan University, Haikou 570228, China"],"raw_orcid":"https://orcid.org/0000-0001-7055-3813","affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"School of Computer Science and Technology, Hainan University, Haikou 570228, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100353028","display_name":"Zilong Zhang","orcid":"https://orcid.org/0000-0002-4934-1258"},"institutions":[{"id":"https://openalex.org/I20942203","display_name":"Hainan University","ror":"https://ror.org/03q648j11","country_code":"CN","type":"education","lineage":["https://openalex.org/I20942203"]},{"id":"https://openalex.org/I4390039265","display_name":"PRG S&Tech (South Korea)","ror":"https://ror.org/02sr2ee22","country_code":null,"type":"company","lineage":["https://openalex.org/I4390039265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zilong Zhang","raw_affiliation_strings":["Hainan University","School of Computer Science and Technology","School of Computer Science and Technology, Hainan University, Haikou 570228, China"],"raw_orcid":"https://orcid.org/0000-0002-4934-1258","affiliations":[{"raw_affiliation_string":"Hainan University","institution_ids":["https://openalex.org/I20942203"]},{"raw_affiliation_string":"School of Computer Science and Technology","institution_ids":["https://openalex.org/I4390039265"]},{"raw_affiliation_string":"School of Computer Science and Technology, Hainan University, Haikou 570228, China","institution_ids":["https://openalex.org/I20942203"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073711572","display_name":"Hua Shi","orcid":"https://orcid.org/0000-0001-8812-5737"},"institutions":[{"id":"https://openalex.org/I4210129862","display_name":"Opto Eletr\u00f4nica (Brazil)","ror":"https://ror.org/03st26d34","country_code":"BR","type":"company","lineage":["https://openalex.org/I4210129862"]},{"id":"https://openalex.org/I75867142","display_name":"Xiamen University of Technology","ror":"https://ror.org/01285e189","country_code":"CN","type":"education","lineage":["https://openalex.org/I75867142"]}],"countries":["BR","CN"],"is_corresponding":false,"raw_author_name":"Hua Shi","raw_affiliation_strings":["School of Opto-electronic and Communication Engineering","Xiamen University of Technology","School of Opto-electronic and Communication Engineering, Xiamen University of Technology, Xiamen 361024, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Opto-electronic and Communication Engineering","institution_ids":["https://openalex.org/I4210129862"]},{"raw_affiliation_string":"Xiamen University of Technology","institution_ids":["https://openalex.org/I75867142"]},{"raw_affiliation_string":"School of Opto-electronic and Communication Engineering, Xiamen University of Technology, Xiamen 361024, China","institution_ids":["https://openalex.org/I75867142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033232360","display_name":"Leyi Wei","orcid":"https://orcid.org/0000-0003-1444-190X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO"],"is_corresponding":true,"raw_author_name":"Leyi Wei","raw_affiliation_strings":["Faculty of Applied Sciences, Macao Polytechnic University, R. de Lu\u00eds Gonzaga Gomes, Macao 999078, China","School of Software","Shandong University","School of Software, Shandong University, Jinan 250101, China"],"raw_orcid":"https://orcid.org/0000-0003-1444-190X","affiliations":[{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, R. de Lu\u00eds Gonzaga Gomes, Macao 999078, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"School of Software","institution_ids":[]},{"raw_affiliation_string":"Shandong University","institution_ids":["https://openalex.org/I154099455"]},{"raw_affiliation_string":"School of Software, Shandong University, Jinan 250101, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5033232360"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I49835588"],"apc_list":null,"apc_paid":null,"fwci":9.8629,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.98609615,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"65","issue":"14","first_page":"7373","last_page":"7392"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8868650197982788},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.7549679279327393},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7441197633743286},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6761929988861084},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6736941933631897},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5017244815826416},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.4590969681739807},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.458747923374176},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.4128771126270294},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.2035360336303711},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08028870820999146}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8868650197982788},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.7549679279327393},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7441197633743286},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6761929988861084},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6736941933631897},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5017244815826416},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.4590969681739807},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.458747923374176},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.4128771126270294},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.2035360336303711},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08028870820999146},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/acs.jcim.5c00530","is_oa":false,"landing_page_url":"https://doi.org/10.1021/acs.jcim.5c00530","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:40626654","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40626654","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1508426471","display_name":null,"funder_award_id":"0177/2023/RIA3","funder_id":"https://openalex.org/F4320323893","funder_display_name":"Fundo para o Desenvolvimento das Ci\u00eancias e da Tecnologia"},{"id":"https://openalex.org/G678402257","display_name":null,"funder_award_id":"62322112","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323893","display_name":"Fundo para o Desenvolvimento das Ci\u00eancias e da Tecnologia","ror":"https://ror.org/05vna4324"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":206,"referenced_works":["https://openalex.org/W1854791334","https://openalex.org/W1931581539","https://openalex.org/W1973578915","https://openalex.org/W1978444624","https://openalex.org/W1983472437","https://openalex.org/W1985718285","https://openalex.org/W1997152791","https://openalex.org/W1998064689","https://openalex.org/W2002213182","https://openalex.org/W2004682883","https://openalex.org/W2016508965","https://openalex.org/W2024342748","https://openalex.org/W2031025789","https://openalex.org/W2035167810","https://openalex.org/W2055752079","https://openalex.org/W2067402644","https://openalex.org/W2072700935","https://openalex.org/W2080614447","https://openalex.org/W2095947376","https://openalex.org/W2099153308","https://openalex.org/W2104817695","https://openalex.org/W2105854065","https://openalex.org/W2128495797","https://openalex.org/W2128545763","https://openalex.org/W2129615006","https://openalex.org/W2131275757","https://openalex.org/W2132926880","https://openalex.org/W2141701343","https://openalex.org/W2147454197","https://openalex.org/W2148143831","https://openalex.org/W2152380569","https://openalex.org/W2156723154","https://openalex.org/W2158714788","https://openalex.org/W2163316049","https://openalex.org/W2170747616","https://openalex.org/W2175270296","https://openalex.org/W2220780917","https://openalex.org/W2250539671","https://openalex.org/W2525830808","https://openalex.org/W2553564063","https://openalex.org/W2563632637","https://openalex.org/W2774174188","https://openalex.org/W2791166180","https://openalex.org/W2791848964","https://openalex.org/W2792378492","https://openalex.org/W2798400874","https://openalex.org/W2803753687","https://openalex.org/W2807001312","https://openalex.org/W2936599975","https://openalex.org/W2937346329","https://openalex.org/W2947612926","https://openalex.org/W2948272581","https://openalex.org/W2951433247","https://openalex.org/W2951765074","https://openalex.org/W2964472696","https://openalex.org/W2978416222","https://openalex.org/W2980789587","https://openalex.org/W2990958466","https://openalex.org/W2998197489","https://openalex.org/W2999569426","https://openalex.org/W3001232072","https://openalex.org/W3005468767","https://openalex.org/W3007215678","https://openalex.org/W3025501158","https://openalex.org/W3040996852","https://openalex.org/W3080137602","https://openalex.org/W3081999257","https://openalex.org/W3087692915","https://openalex.org/W3097405028","https://openalex.org/W3109659125","https://openalex.org/W3124390867","https://openalex.org/W3136366652","https://openalex.org/W3136918052","https://openalex.org/W3150808126","https://openalex.org/W3159343835","https://openalex.org/W3164453494","https://openalex.org/W3164698295","https://openalex.org/W3164941572","https://openalex.org/W3165052418","https://openalex.org/W3178663131","https://openalex.org/W3203741962","https://openalex.org/W3205595869","https://openalex.org/W3206629920","https://openalex.org/W3209603403","https://openalex.org/W3210497502","https://openalex.org/W3212983993","https://openalex.org/W3214417866","https://openalex.org/W3217372366","https://openalex.org/W4205689731","https://openalex.org/W4213430678","https://openalex.org/W4214618924","https://openalex.org/W4214943162","https://openalex.org/W4214949197","https://openalex.org/W4225568592","https://openalex.org/W4226148785","https://openalex.org/W4226320060","https://openalex.org/W4242369701","https://openalex.org/W4285393303","https://openalex.org/W4285597312","https://openalex.org/W4288036349","https://openalex.org/W4292678539","https://openalex.org/W4298325713","https://openalex.org/W4304114151","https://openalex.org/W4306686117","https://openalex.org/W4307361029","https://openalex.org/W4308052938","https://openalex.org/W4308067558","https://openalex.org/W4308370073","https://openalex.org/W4308834846","https://openalex.org/W4309578061","https://openalex.org/W4309609844","https://openalex.org/W4310641985","https://openalex.org/W4321015480","https://openalex.org/W4322580799","https://openalex.org/W4324019787","https://openalex.org/W4327550249","https://openalex.org/W4360805510","https://openalex.org/W4365459335","https://openalex.org/W4365516368","https://openalex.org/W4366089579","https://openalex.org/W4377965472","https://openalex.org/W4379928157","https://openalex.org/W4381252742","https://openalex.org/W4382198814","https://openalex.org/W4384299806","https://openalex.org/W4385199240","https://openalex.org/W4385515833","https://openalex.org/W4385814218","https://openalex.org/W4386022032","https://openalex.org/W4386154592","https://openalex.org/W4386234010","https://openalex.org/W4386391003","https://openalex.org/W4386439087","https://openalex.org/W4386821875","https://openalex.org/W4387241172","https://openalex.org/W4387780708","https://openalex.org/W4387879417","https://openalex.org/W4388080288","https://openalex.org/W4388621595","https://openalex.org/W4389439862","https://openalex.org/W4389450648","https://openalex.org/W4389526560","https://openalex.org/W4389980269","https://openalex.org/W4390116209","https://openalex.org/W4390558569","https://openalex.org/W4390828734","https://openalex.org/W4390836820","https://openalex.org/W4390946589","https://openalex.org/W4391113029","https://openalex.org/W4391231361","https://openalex.org/W4391877244","https://openalex.org/W4392162030","https://openalex.org/W4392562486","https://openalex.org/W4392571650","https://openalex.org/W4392956895","https://openalex.org/W4392966685","https://openalex.org/W4393115982","https://openalex.org/W4393393473","https://openalex.org/W4394779505","https://openalex.org/W4396572253","https://openalex.org/W4396707011","https://openalex.org/W4396765902","https://openalex.org/W4396873165","https://openalex.org/W4399258661","https://openalex.org/W4399328472","https://openalex.org/W4399356471","https://openalex.org/W4400060951","https://openalex.org/W4400396940","https://openalex.org/W4400519431","https://openalex.org/W4400723388","https://openalex.org/W4400864148","https://openalex.org/W4401103154","https://openalex.org/W4401357865","https://openalex.org/W4401440911","https://openalex.org/W4401503596","https://openalex.org/W4401525591","https://openalex.org/W4401602316","https://openalex.org/W4401890075","https://openalex.org/W4402053335","https://openalex.org/W4402076677","https://openalex.org/W4402351911","https://openalex.org/W4402585620","https://openalex.org/W4402727756","https://openalex.org/W4402847507","https://openalex.org/W4402947492","https://openalex.org/W4403701482","https://openalex.org/W4403782367","https://openalex.org/W4403782504","https://openalex.org/W4403907284","https://openalex.org/W4404260604","https://openalex.org/W4404343420","https://openalex.org/W4404650713","https://openalex.org/W4405316192","https://openalex.org/W4405588346","https://openalex.org/W4405594250","https://openalex.org/W4405622764","https://openalex.org/W4406066491","https://openalex.org/W4406182978","https://openalex.org/W4406268612","https://openalex.org/W4406536366","https://openalex.org/W4407301244","https://openalex.org/W4408301712","https://openalex.org/W4408416453","https://openalex.org/W4409493212","https://openalex.org/W4409536923","https://openalex.org/W6600424091"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Antimicrobial":[0],"peptides":[1],"(AMPs)":[2],"have":[3],"garnered":[4],"significant":[5],"attention":[6],"from":[7,86],"researchers":[8],"as":[9],"effective":[10],"alternatives":[11],"to":[12,35],"antibiotics.":[13],"In":[14],"recent":[15],"years,":[16],"deep":[17,49,101,118],"learning":[18,29,50,62,102,119],"has":[19],"demonstrated":[20],"unique":[21],"advantages":[22],"in":[23,51,121,125,145],"AMP":[24,52,84,122],"prediction,":[25,53,123],"surpassing":[26],"traditional":[27],"machine":[28],"methods":[30],"and":[31,60,77,80,114,134,140],"offering":[32,104],"new":[33],"avenues":[34],"address":[36],"the":[37,45,68,87,112],"issue":[38],"of":[39,48,70,89,127],"antibiotic":[40],"resistance.":[41],"This":[42],"review":[43,94],"introduces":[44],"research":[46,144],"foundations":[47],"covering":[54],"data":[55,128,130],"set":[56],"status,":[57],"processing":[58],"methods,":[59],"representation":[61],"approaches.":[63],"It":[64],"particularly":[65,124],"focuses":[66],"on":[67],"application":[69],"basic":[71],"models,":[72,74,76,103],"language":[73],"graph-related":[75],"other":[78],"mixed":[79],"multimodal":[81],"models":[82],"for":[83,106,142],"prediction":[85],"perspective":[88,139],"algorithmic":[90],"models.":[91],"Additionally,":[92],"this":[93,146],"provides":[95],"a":[96,137],"comparative":[97],"validation":[98],"using":[99],"classic":[100],"guidance":[105],"subsequent":[107],"research.":[108],"Finally,":[109],"it":[110],"discusses":[111],"challenges":[113],"opportunities":[115],"faced":[116],"by":[117],"algorithms":[120],"terms":[126],"balance,":[129],"augmentation,":[131],"cyclic":[132],"peptides,":[133],"interpretability,":[135],"providing":[136],"comprehensive":[138],"reference":[141],"further":[143],"field.":[147]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
