{"id":"https://openalex.org/W2050300087","doi":"https://doi.org/10.1021/ci9801825","title":"Parameter Refinement for Molecular Docking","display_name":"Parameter Refinement for Molecular Docking","publication_year":1998,"publication_date":"1998-08-19","ids":{"openalex":"https://openalex.org/W2050300087","doi":"https://doi.org/10.1021/ci9801825","mag":"2050300087"},"language":"en","primary_location":{"id":"doi:10.1021/ci9801825","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci9801825","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042429982","display_name":"Jukka-Pekka Salo","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Jukka-Pekka Salo","raw_affiliation_strings":["Division of Pharmaceutical Chemistry, Department of Pharmacy, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Chemistry, Department of Pharmacy, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035071915","display_name":"Ari Yliniemel\u00e4","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Ari Yliniemel\u00e4","raw_affiliation_strings":["Division of Pharmaceutical Chemistry, Department of Pharmacy, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Chemistry, Department of Pharmacy, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102227596","display_name":"Jyrki Taskinen","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jyrki Taskinen","raw_affiliation_strings":["Division of Pharmaceutical Chemistry, Department of Pharmacy, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Division of Pharmaceutical Chemistry, Department of Pharmacy, P.O. Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042429982"],"corresponding_institution_ids":["https://openalex.org/I133731052"],"apc_list":null,"apc_paid":null,"fwci":0.4908,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65013774,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"38","issue":"5","first_page":"832","last_page":"839"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.7481968998908997},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6622558832168579},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5456796288490295},{"id":"https://openalex.org/keywords/partial-least-squares-regression","display_name":"Partial least squares regression","score":0.5286828875541687},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.49802303314208984},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3953359127044678},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3353123664855957},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2799382507801056},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2674328684806824},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13063004612922668},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12669578194618225}],"concepts":[{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.7481968998908997},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6622558832168579},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5456796288490295},{"id":"https://openalex.org/C22354355","wikidata":"https://www.wikidata.org/wiki/Q422009","display_name":"Partial least squares regression","level":2,"score":0.5286828875541687},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.49802303314208984},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3953359127044678},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3353123664855957},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2799382507801056},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2674328684806824},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13063004612922668},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12669578194618225},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1021/ci9801825","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci9801825","pdf_url":null,"source":{"id":"https://openalex.org/S171559003","display_name":"Journal of Chemical Information and Computer Sciences","issn_l":"0095-2338","issn":["0095-2338","1520-5142"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Computer Sciences","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.7699999809265137,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1966041739","https://openalex.org/W1985953075","https://openalex.org/W1986428438","https://openalex.org/W1986671430","https://openalex.org/W1995032984","https://openalex.org/W1998791246","https://openalex.org/W2008288225","https://openalex.org/W2015518146","https://openalex.org/W2015596806","https://openalex.org/W2018243716","https://openalex.org/W2027640169","https://openalex.org/W2032959518","https://openalex.org/W2038221923","https://openalex.org/W2040160536","https://openalex.org/W2043460511","https://openalex.org/W2046397795","https://openalex.org/W2054338762","https://openalex.org/W2055577518","https://openalex.org/W2058444859","https://openalex.org/W2063908367","https://openalex.org/W2067455153","https://openalex.org/W2073082810","https://openalex.org/W2108508060","https://openalex.org/W2137882621","https://openalex.org/W2161117347","https://openalex.org/W2168496028","https://openalex.org/W2624104900","https://openalex.org/W4239840825"],"related_works":["https://openalex.org/W4282913408","https://openalex.org/W2100436540","https://openalex.org/W2300502530","https://openalex.org/W3206488795","https://openalex.org/W3201417569","https://openalex.org/W3033824302","https://openalex.org/W2070163817","https://openalex.org/W2091429460","https://openalex.org/W2102475066","https://openalex.org/W4310018788"],"abstract_inverted_index":{"Finding":[0],"the":[1,22,25,28,33,36,87,98],"optimal":[2],"parameter":[3,62,73],"values":[4,74],"for":[5,57,77,113],"any":[6],"computer":[7],"program":[8],"with":[9,32,97],"adjustable":[10],"parameters":[11],"can":[12],"be":[13],"very":[14,94],"time":[15],"consuming.":[16],"In":[17],"this":[18,43],"paper,":[19],"we":[20,51],"introduce":[21],"use":[23],"of":[24,35,69],"Plackett\u2212Burman":[26],"and":[27],"central":[29],"composite":[30],"designs":[31],"aid":[34],"partial":[37],"least":[38],"squares":[39],"method":[40],"to":[41,117],"tackle":[42],"problem.":[44],"Using":[45],"DOCK3.5":[46],"as":[47],"a":[48,54,66],"test":[49],"case,":[50],"also":[52],"show":[53],"four-step":[55],"procedure":[56],"sequential":[58],"docking":[59],"utilizing":[60],"two":[61],"sets,":[63],"both":[64],"effecting":[65],"different":[67],"level":[68],"accuracy.":[70],"The":[71,107],"DOCK":[72],"were":[75],"refined":[76],"protein":[78,100,120],"kinase":[79,101,121],"C":[80,102,122],"regulatory":[81,103],"domain":[82],"yielding":[83],"an":[84],"orientation":[85],"at":[86],"global":[88],"\u201cenergy\u201d":[89],"minimum,":[90],"which":[91],"is":[92,109],"in":[93],"good":[95],"agreement":[96],"experimental":[99],"domain\u2212phorbol":[104],"13-acetate":[105],"complex.":[106],"scheme":[108],"now":[110],"being":[111],"used":[112],"screening":[114],"molecular":[115],"databases":[116],"find":[118],"putative":[119],"inhibitors.":[123]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
