{"id":"https://openalex.org/W2084267598","doi":"https://doi.org/10.1021/ci9000844","title":"Concept-Based Semi-Automatic Classification of Drugs","display_name":"Concept-Based Semi-Automatic Classification of Drugs","publication_year":2009,"publication_date":"2009-08-10","ids":{"openalex":"https://openalex.org/W2084267598","doi":"https://doi.org/10.1021/ci9000844","mag":"2084267598","pmid":"https://pubmed.ncbi.nlm.nih.gov/19663460"},"language":"en","primary_location":{"id":"doi:10.1021/ci9000844","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci9000844","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035060987","display_name":"Harsha Gurulingappa","orcid":"https://orcid.org/0009-0004-8593-7704"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Harsha Gurulingappa","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001979331","display_name":"Corinna Kol\u00e1\u0159ik","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Corinna Kol\u00e1\u0159ik","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077378114","display_name":"Juliane Fluck","orcid":"https://orcid.org/0000-0003-1379-7023"},"institutions":[{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Juliane Fluck","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, 53754, Sankt Augustin, Germany and Bonn-Aachen International Center for Information Technology B-IT, Dahlmannstrasse 2, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035060987"],"corresponding_institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"],"apc_list":null,"apc_paid":null,"fwci":1.767,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.84712299,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"49","issue":"8","first_page":"1986","last_page":"1992"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9708999991416931,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7093062996864319},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.6785743236541748},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.6386334896087646},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6323074102401733},{"id":"https://openalex.org/keywords/bootstrapping","display_name":"Bootstrapping (finance)","score":0.584755003452301},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5809882879257202},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.5766698122024536},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5674107074737549},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47990167140960693},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4392605721950531},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40725836157798767},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17154303193092346},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.14320781826972961},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08160403370857239},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07747581601142883}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7093062996864319},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.6785743236541748},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.6386334896087646},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6323074102401733},{"id":"https://openalex.org/C207609745","wikidata":"https://www.wikidata.org/wiki/Q4944086","display_name":"Bootstrapping (finance)","level":2,"score":0.584755003452301},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5809882879257202},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.5766698122024536},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5674107074737549},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47990167140960693},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4392605721950531},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40725836157798767},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17154303193092346},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.14320781826972961},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08160403370857239},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07747581601142883},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/ci9000844","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci9000844","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:19663460","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19663460","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:fraunhofer.de:N-104699","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-104699.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/219136","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/219136","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W103980920","https://openalex.org/W2023398713","https://openalex.org/W2089013398","https://openalex.org/W2118020653","https://openalex.org/W2121953357","https://openalex.org/W2125283600","https://openalex.org/W2132773777","https://openalex.org/W2137539029","https://openalex.org/W2141869602","https://openalex.org/W2147405665","https://openalex.org/W2152317795","https://openalex.org/W2154896031","https://openalex.org/W2156077095","https://openalex.org/W2601530120","https://openalex.org/W4285719527","https://openalex.org/W4292901648"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001","https://openalex.org/W3174741986","https://openalex.org/W4389861022"],"abstract_inverted_index":{"The":[0,108,128,146,180],"anatomical":[1],"therapeutic":[2],"chemical":[3,191],"(ATC)":[4],"classification":[5,19,183,187],"system":[6,129,184],"maintained":[7],"by":[8,162],"the":[9,18,42,77,84,143,155,167],"World":[10],"Health":[11],"Organization":[12],"provides":[13],"a":[14,26,58,64,116,133,163],"global":[15,43],"standard":[16],"for":[17,28,51,125],"of":[20,66,76,135,159,166,173],"medical":[21],"substances":[22],"and":[23,70,105,170],"serves":[24],"as":[25,113],"source":[27],"drug":[29,44],"repurposing":[30],"research.":[31],"Nevertheless,":[32],"it":[33],"lacks":[34],"several":[35],"drugs":[36,80,138],"that":[37,99],"are":[38,111],"major":[39],"players":[40],"in":[41,83],"market.":[45],"In":[46],"order":[47],"to":[48,93,119,151],"establish":[49],"classifications":[50],"yet":[52],"unclassified":[53,126],"drugs,":[54],"this":[55],"paper":[56],"presents":[57],"newly":[59],"developed":[60],"approach":[61],"based":[62,189],"on":[63,132,142,175,190],"combination":[65],"information":[67,78],"extraction":[68],"(IE)":[69],"machine":[71],"learning":[72],"(ML)":[73],"techniques.":[74],"Most":[75],"about":[79],"is":[81,91],"published":[82],"scientific":[85],"articles.":[86],"Therefore,":[87],"an":[88,140,171,176],"IE-based":[89],"framework":[90,118],"employed":[92],"extract":[94],"terms":[95,110],"from":[96],"free":[97],"text":[98],"express":[100],"drug's":[101],"chemical,":[102],"pharmacological,":[103],"therapeutic,":[104],"systemic":[106],"effects.":[107],"extracted":[109],"used":[112],"features":[114],"within":[115],"ML":[117],"predict":[120],"putative":[121],"ATC":[122,136],"class":[123,147],"labels":[124],"drugs.":[127],"was":[130],"tested":[131],"portion":[134],"containing":[137],"with":[139,154],"indication":[141],"cardiovascular":[144],"system.":[145],"prediction":[148],"turned":[149],"out":[150],"be":[152],"successful":[153],"best":[156],"predictive":[157],"accuracy":[158,172],"89.47%":[160],"validated":[161],"100-fold":[164],"bootstrapping":[165],"training":[168],"set":[169],"77.12%":[174],"independent":[177],"test":[178],"set.":[179],"presented":[181],"concept-based":[182],"outperformed":[185],"state-of-the-art":[186],"methods":[188],"structure":[192],"properties.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
