{"id":"https://openalex.org/W1979756686","doi":"https://doi.org/10.1021/ci8004594","title":"Protein Design Based on Parallel Dimensional Reduction","display_name":"Protein Design Based on Parallel Dimensional Reduction","publication_year":2009,"publication_date":"2009-05-07","ids":{"openalex":"https://openalex.org/W1979756686","doi":"https://doi.org/10.1021/ci8004594","mag":"1979756686","pmid":"https://pubmed.ncbi.nlm.nih.gov/19422245"},"language":"en","primary_location":{"id":"doi:10.1021/ci8004594","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci8004594","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008023930","display_name":"Germ\u00e1n Molt\u00f3","orcid":"https://orcid.org/0000-0002-8049-253X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Germ\u00e1n Molt\u00f3","raw_affiliation_strings":["Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France","institution_ids":["https://openalex.org/I88467170","https://openalex.org/I60053951","https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041170743","display_name":"Mar\u00eda Su\u00e1rez\u2010Diez","orcid":"https://orcid.org/0000-0001-5845-146X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Su\u00e1rez","raw_affiliation_strings":["Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France","institution_ids":["https://openalex.org/I88467170","https://openalex.org/I60053951","https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054478834","display_name":"Pablo Tortosa","orcid":"https://orcid.org/0000-0002-7928-7264"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Pablo Tortosa","raw_affiliation_strings":["Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France","institution_ids":["https://openalex.org/I88467170","https://openalex.org/I60053951","https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100729617","display_name":"Jos\u00e9 M. Alonso","orcid":"https://orcid.org/0000-0001-6812-7364"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M. Alonso","raw_affiliation_strings":["Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France","institution_ids":["https://openalex.org/I88467170","https://openalex.org/I60053951","https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068387424","display_name":"Vicente Hern\u00e1ndez","orcid":"https://orcid.org/0000-0002-7793-6232"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"Vicente Hern\u00e1ndez","raw_affiliation_strings":["Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France","institution_ids":["https://openalex.org/I88467170","https://openalex.org/I60053951","https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040063355","display_name":"Alfonso Jaramillo","orcid":"https://orcid.org/0000-0002-6313-9689"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["ES","FR"],"is_corresponding":true,"raw_author_name":"Alfonso Jaramillo","raw_affiliation_strings":["Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Sistemas Inform\u00e1ticos y Computaci\u00f3n, Universidad Polit\u00e9cnica de Valencia, 46022 Valencia, Spain, Epigenomics Project, Genopole-Universit\u00e9 d'\u00c9vry Val d'Essonne-CNRS UPS 3201, 91034 \u00c9vry, France, and Laboratoire de Biochimie, \u00c9cole Polytechnique-CNRS UMR 7654, 91128, Palaiseau, France","institution_ids":["https://openalex.org/I88467170","https://openalex.org/I60053951","https://openalex.org/I142476485","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5040063355"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I60053951","https://openalex.org/I88467170"],"apc_list":null,"apc_paid":null,"fwci":0.135,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.52578582,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"49","issue":"5","first_page":"1261","last_page":"1271"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7098473310470581},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.6833851933479309},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.5943118929862976},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.567092776298523},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5042897462844849},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10471329092979431},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.10240906476974487},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.09608018398284912},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0929337739944458}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7098473310470581},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.6833851933479309},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.5943118929862976},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.567092776298523},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5042897462844849},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10471329092979431},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.10240906476974487},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.09608018398284912},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0929337739944458},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019281","descriptor_name":"Dimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019281","descriptor_name":"Dimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019281","descriptor_name":"Dimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/ci8004594","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci8004594","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:19422245","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19422245","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:HAL:hal-00766035v1","is_oa":false,"landing_page_url":"https://polytechnique.hal.science/hal-00766035","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Chemical Information and Modeling, 2009, 49 (5), pp.1261-71. &#x27E8;10.1021/ci8004594&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W134816542","https://openalex.org/W205095828","https://openalex.org/W1506342804","https://openalex.org/W1548178570","https://openalex.org/W1549691744","https://openalex.org/W1965205049","https://openalex.org/W1969644422","https://openalex.org/W1972798923","https://openalex.org/W1981159651","https://openalex.org/W1982792504","https://openalex.org/W1987856925","https://openalex.org/W1987960749","https://openalex.org/W1995824897","https://openalex.org/W2003229787","https://openalex.org/W2011495938","https://openalex.org/W2016902544","https://openalex.org/W2018249267","https://openalex.org/W2027189612","https://openalex.org/W2032675793","https://openalex.org/W2033783091","https://openalex.org/W2037603210","https://openalex.org/W2046048339","https://openalex.org/W2048783098","https://openalex.org/W2052257784","https://openalex.org/W2054467356","https://openalex.org/W2056073017","https://openalex.org/W2058187117","https://openalex.org/W2061378257","https://openalex.org/W2073275267","https://openalex.org/W2078362683","https://openalex.org/W2082260955","https://openalex.org/W2085497102","https://openalex.org/W2089473150","https://openalex.org/W2092102609","https://openalex.org/W2103622571","https://openalex.org/W2121096033","https://openalex.org/W2122220546","https://openalex.org/W2126242078","https://openalex.org/W2134759124","https://openalex.org/W2143562636","https://openalex.org/W2162166182","https://openalex.org/W4246356731"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W1975570126"],"abstract_inverted_index":{"The":[0],"design":[1,38,52,73],"of":[2,27,47,53,74,89,98,101],"proteins":[3,54],"with":[4,12,30],"targeted":[5],"properties":[6],"is":[7],"a":[8,19,24,31],"computationally":[9],"intensive":[10],"task":[11],"large":[13,39],"memory":[14,45],"requirements.":[15],"We":[16,66,83],"have":[17,67,84],"developed":[18],"novel":[20],"approach":[21],"that":[22],"combines":[23],"dimensional":[25],"reduction":[26],"the":[28,44,48,51,72,87,96,99,102],"problem":[29],"High":[32],"Performance":[33],"Computing":[34],"platform":[35],"to":[36,59,71,110],"efficiently":[37],"proteins.":[40],"This":[41],"tool":[42],"overcomes":[43],"limits":[46],"process,":[49],"allowing":[50],"whose":[55],"requirements":[56],"prevent":[57],"them":[58],"be":[60,108],"designed":[61],"in":[62],"traditional":[63],"sequential":[64],"platforms.":[65],"applied":[68,109],"our":[69,105],"algorithm":[70],"functional":[75],"proteins,":[76],"optimizing":[77],"for":[78],"both":[79],"catalysis":[80],"and":[81],"stability.":[82],"also":[85],"studied":[86],"redesign":[88],"dimerization":[90],"interfaces,":[91],"taking":[92],"simultaneously":[93],"into":[94],"account":[95],"stability":[97],"subunits":[100],"dimer.":[103],"However,":[104],"methodology":[106],"can":[107],"any":[111],"computational":[112],"chemistry":[113],"application":[114],"requiring":[115],"combinatorial":[116],"optimization":[117],"techniques.":[118]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
