{"id":"https://openalex.org/W2061237926","doi":"https://doi.org/10.1021/ci8003978","title":"Better than Random? The Chemotype Enrichment Problem","display_name":"Better than Random? The Chemotype Enrichment Problem","publication_year":2009,"publication_date":"2009-04-27","ids":{"openalex":"https://openalex.org/W2061237926","doi":"https://doi.org/10.1021/ci8003978","mag":"2061237926","pmid":"https://pubmed.ncbi.nlm.nih.gov/19397275"},"language":"en","primary_location":{"id":"doi:10.1021/ci8003978","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci8003978","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053579338","display_name":"Mark Mackey","orcid":"https://orcid.org/0000-0001-5131-7583"},"institutions":[{"id":"https://openalex.org/I4210165610","display_name":"Molecular Discovery (United Kingdom)","ror":"https://ror.org/0576dtf44","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210165610"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Mark D. Mackey","raw_affiliation_strings":["Cresset BioMolecular Discovery Ltd., BioPark Hertfordshire, Broadwater Road, Welwyn Garden City, Hertfordshire AL7 3AX, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cresset BioMolecular Discovery Ltd., BioPark Hertfordshire, Broadwater Road, Welwyn Garden City, Hertfordshire AL7 3AX, United Kingdom","institution_ids":["https://openalex.org/I4210165610"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051322573","display_name":"James L. Melville","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165610","display_name":"Molecular Discovery (United Kingdom)","ror":"https://ror.org/0576dtf44","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210165610"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James L. Melville","raw_affiliation_strings":["Cresset BioMolecular Discovery Ltd., BioPark Hertfordshire, Broadwater Road, Welwyn Garden City, Hertfordshire AL7 3AX, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cresset BioMolecular Discovery Ltd., BioPark Hertfordshire, Broadwater Road, Welwyn Garden City, Hertfordshire AL7 3AX, United Kingdom","institution_ids":["https://openalex.org/I4210165610"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5053579338"],"corresponding_institution_ids":["https://openalex.org/I4210165610"],"apc_list":null,"apc_paid":null,"fwci":8.0217,"has_fulltext":false,"cited_by_count":60,"citation_normalized_percentile":{"value":0.98003943,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"49","issue":"5","first_page":"1154","last_page":"1162"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemotype","display_name":"Chemotype","score":0.9859192371368408},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5634340047836304},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.44271862506866455},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37269312143325806},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36504608392715454},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26732635498046875},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19749462604522705},{"id":"https://openalex.org/keywords/food-science","display_name":"Food science","score":0.08778667449951172},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.06884530186653137}],"concepts":[{"id":"https://openalex.org/C153784791","wikidata":"https://www.wikidata.org/wiki/Q2212766","display_name":"Chemotype","level":3,"score":0.9859192371368408},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5634340047836304},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.44271862506866455},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37269312143325806},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36504608392715454},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26732635498046875},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19749462604522705},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.08778667449951172},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.06884530186653137},{"id":"https://openalex.org/C2777278459","wikidata":"https://www.wikidata.org/wiki/Q170885","display_name":"Essential oil","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci8003978","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci8003978","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:19397275","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19397275","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W356029676","https://openalex.org/W646628079","https://openalex.org/W1506387682","https://openalex.org/W1970208561","https://openalex.org/W1979597166","https://openalex.org/W1980069772","https://openalex.org/W1986568494","https://openalex.org/W1990627326","https://openalex.org/W2001816314","https://openalex.org/W2002391152","https://openalex.org/W2003752196","https://openalex.org/W2014276094","https://openalex.org/W2014501798","https://openalex.org/W2015461838","https://openalex.org/W2015907087","https://openalex.org/W2026910177","https://openalex.org/W2027065525","https://openalex.org/W2039526577","https://openalex.org/W2042110087","https://openalex.org/W2055410316","https://openalex.org/W2058433776","https://openalex.org/W2058820833","https://openalex.org/W2060531713","https://openalex.org/W2081266727","https://openalex.org/W2095501702","https://openalex.org/W2097420030","https://openalex.org/W2121895929","https://openalex.org/W2127760066","https://openalex.org/W2133773344","https://openalex.org/W2158698691","https://openalex.org/W2208175234","https://openalex.org/W2554073607"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2738670501","https://openalex.org/W1999419815","https://openalex.org/W2887903305","https://openalex.org/W2018628688","https://openalex.org/W3109833960","https://openalex.org/W2084985154","https://openalex.org/W2037775237","https://openalex.org/W3130298030","https://openalex.org/W1990374482"],"abstract_inverted_index":{"Chemotype":[0],"enrichment":[1],"is":[2,49],"increasingly":[3],"recognized":[4],"as":[5],"an":[6],"important":[7,94],"measure":[8],"of":[9,42,54],"virtual":[10],"screening":[11],"performance.":[12],"However,":[13],"little":[14],"attention":[15],"has":[16,93],"been":[17],"paid":[18],"to":[19,45,51,74],"producing":[20],"metrics":[21],"which":[22],"can":[23],"quantify":[24],"chemotype":[25,35,72],"retrieval.":[26],"Here,":[27],"we":[28],"examine":[29],"two":[30],"different":[31],"protocols":[32],"for":[33,69],"analyzing":[34],"retrieval:":[36],"\"cluster":[37],"averaging\",":[38],"where":[39,64],"the":[40,46,52,58,66,75,85,90],"contribution":[41],"each":[43],"active":[44,68],"scoring":[47],"metric":[48],"proportional":[50],"number":[53],"other":[55],"actives":[56],"with":[57,98],"same":[59],"chemotype,":[60],"and":[61],"\"first":[62],"found\",":[63],"only":[65],"first":[67],"a":[70],"given":[71],"contributes":[73],"score.":[76],"We":[77],"demonstrate":[78],"that":[79],"this":[80],"latter":[81],"analysis,":[82],"common":[83],"in":[84,89],"qualitative":[86],"analysis":[87],"used":[88],"current":[91],"literature,":[92],"drawbacks":[95],"when":[96],"combined":[97],"quantitative":[99],"metrics.":[100]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
