{"id":"https://openalex.org/W1984043115","doi":"https://doi.org/10.1021/ci700173y","title":"Collaborative Annotation of 3D Crystallographic Models","display_name":"Collaborative Annotation of 3D Crystallographic Models","publication_year":2007,"publication_date":"2007-09-28","ids":{"openalex":"https://openalex.org/W1984043115","doi":"https://doi.org/10.1021/ci700173y","mag":"1984043115","pmid":"https://pubmed.ncbi.nlm.nih.gov/17900174"},"language":"en","primary_location":{"id":"doi:10.1021/ci700173y","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci700173y","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019001786","display_name":"Jane Hunter","orcid":"https://orcid.org/0000-0002-7163-4137"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"J. Hunter","raw_affiliation_strings":["The University of Queensland, St. Lucia, Queensland, Australia 4072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Queensland, St. Lucia, Queensland, Australia 4072","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052531201","display_name":"Michael Henderson","orcid":"https://orcid.org/0000-0002-6389-8300"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"M. Henderson","raw_affiliation_strings":["The University of Queensland, St. Lucia, Queensland, Australia 4072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Queensland, St. Lucia, Queensland, Australia 4072","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100609516","display_name":"Irfan Khan","orcid":"https://orcid.org/0000-0003-1878-7836"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"I. Khan","raw_affiliation_strings":["The University of Queensland, St. Lucia, Queensland, Australia 4072"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Queensland, St. Lucia, Queensland, Australia 4072","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5019001786"],"corresponding_institution_ids":["https://openalex.org/I165143802"],"apc_list":null,"apc_paid":null,"fwci":0.5492,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.64128553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"47","issue":"6","first_page":"2475","last_page":"2484"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7479758262634277},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.7232980132102966},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6658545732498169},{"id":"https://openalex.org/keywords/asynchronous-communication","display_name":"Asynchronous communication","score":0.528538167476654},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.49967432022094727},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.4958573281764984},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.49108171463012695},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3784862458705902},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2879091501235962},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12818580865859985},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.07856467366218567}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7479758262634277},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.7232980132102966},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6658545732498169},{"id":"https://openalex.org/C151319957","wikidata":"https://www.wikidata.org/wiki/Q752739","display_name":"Asynchronous communication","level":2,"score":0.528538167476654},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.49967432022094727},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.4958573281764984},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.49108171463012695},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3784862458705902},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2879091501235962},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12818580865859985},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.07856467366218567},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/ci700173y","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci700173y","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:17900174","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17900174","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.175.5594","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.175.5594","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.itee.uq.edu.au/%7Eeresearch/papers/2007/JCIM200709.pdf","raw_type":"text"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:130741","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320984","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1540703374","https://openalex.org/W1544658515","https://openalex.org/W1553708442","https://openalex.org/W1603300564","https://openalex.org/W1910105166","https://openalex.org/W1979566122","https://openalex.org/W1987688066","https://openalex.org/W2003122343","https://openalex.org/W2015642465","https://openalex.org/W2017199324","https://openalex.org/W2019868169","https://openalex.org/W2026258231","https://openalex.org/W2032842297","https://openalex.org/W2051810242","https://openalex.org/W2060744706","https://openalex.org/W2084038850","https://openalex.org/W2085573521","https://openalex.org/W2090656662","https://openalex.org/W2096975829","https://openalex.org/W2099137552","https://openalex.org/W2104979868","https://openalex.org/W2106539366","https://openalex.org/W2111796195","https://openalex.org/W2112845989","https://openalex.org/W2130479394","https://openalex.org/W2132722663","https://openalex.org/W2154829072","https://openalex.org/W2163363362","https://openalex.org/W2713742993","https://openalex.org/W3141692298","https://openalex.org/W4234259908"],"related_works":["https://openalex.org/W47352601","https://openalex.org/W2981957539","https://openalex.org/W4287378204","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W2361861616","https://openalex.org/W631546281","https://openalex.org/W2263699433","https://openalex.org/W2377979023"],"abstract_inverted_index":{"This":[0],"paper":[1],"describes":[2],"the":[3,23,92,99,144],"AnnoCryst":[4,53],"system-a":[5],"tool":[6],"that":[7,40,152],"was":[8],"designed":[9],"to":[10,14,44,57,60,138,162],"enable":[11],"authenticated":[12],"collaborators":[13],"share":[15],"online":[16,74],"discussions":[17],"about":[18],"3D":[19,61,100,140],"crystallographic":[20,62],"structures":[21,102],"through":[22,111],"asynchronous":[24],"attachment,":[25],"storage,":[26],"and":[27,97,121,158],"retrieval":[28],"of":[29,155],"annotations.":[30],"Annotations":[31],"are":[32,125],"personal":[33],"comments,":[34],"interpretations,":[35],"questions,":[36],"assessments,":[37],"or":[38,49,72,80],"references":[39],"can":[41,114],"be":[42,58,115],"attached":[43,59],"files,":[45],"data,":[46],"digital":[47],"objects,":[48],"Web":[50,87,130],"pages.":[51],"The":[52,89,123],"system":[54,90,145],"enables":[55],"annotations":[56,113,124],"models":[63],"retrieved":[64],"from":[65],"either":[66],"private":[67],"local":[68],"repositories":[69],"(e.g.,":[70,76],"Fedora)":[71],"public":[73],"databases":[75],"Protein":[77],"Data":[78],"Bank":[79],"Inorganic":[81],"Crystal":[82],"Structure":[83],"Database)":[84],"via":[85],"a":[86,128,149],"browser.":[88],"uses":[91],"Jmol":[93,105],"plugin":[94],"for":[95],"viewing":[96],"manipulating":[98],"crystal":[101],"but":[103],"extends":[104],"by":[106],"providing":[107],"an":[108],"additional":[109],"interface":[110],"which":[112,134],"created,":[116],"attached,":[117],"stored,":[118],"searched,":[119],"browsed,":[120],"retrieved.":[122],"stored":[126],"on":[127],"standardized":[129],"annotation":[131],"server":[132],"(Annotea),":[133],"has":[135],"been":[136],"extended":[137],"support":[139],"macromolecular":[141],"structures.":[142],"Finally,":[143],"is":[146,153],"embedded":[147],"within":[148],"security":[150],"framework":[151],"capable":[154],"authenticating":[156],"users":[157],"restricting":[159],"access":[160],"only":[161],"trusted":[163],"colleagues.":[164]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
