{"id":"https://openalex.org/W1979597166","doi":"https://doi.org/10.1021/ci700130j","title":"A Comparison of Field-Based Similarity Searching Methods: CatShape, FBSS, and ROCS","display_name":"A Comparison of Field-Based Similarity Searching Methods: CatShape, FBSS, and ROCS","publication_year":2008,"publication_date":"2008-03-20","ids":{"openalex":"https://openalex.org/W1979597166","doi":"https://doi.org/10.1021/ci700130j","mag":"1979597166","pmid":"https://pubmed.ncbi.nlm.nih.gov/18351728"},"language":"en","primary_location":{"id":"doi:10.1021/ci700130j","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci700130j","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057083656","display_name":"Kirstin Moffat","orcid":null},"institutions":[{"id":"https://openalex.org/I188950975","display_name":"GlaxoSmithKline (United Kingdom)","ror":"https://ror.org/01xsqw823","country_code":"GB","type":"company","lineage":["https://openalex.org/I188950975"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kirstin Moffat","raw_affiliation_strings":["Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom","institution_ids":["https://openalex.org/I188950975","https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030046388","display_name":"Valerie J. Gillet","orcid":"https://orcid.org/0000-0002-8403-3111"},"institutions":[{"id":"https://openalex.org/I188950975","display_name":"GlaxoSmithKline (United Kingdom)","ror":"https://ror.org/01xsqw823","country_code":"GB","type":"company","lineage":["https://openalex.org/I188950975"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Valerie J. Gillet","raw_affiliation_strings":["Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom","institution_ids":["https://openalex.org/I188950975","https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108785323","display_name":"Martin Whittle","orcid":null},"institutions":[{"id":"https://openalex.org/I188950975","display_name":"GlaxoSmithKline (United Kingdom)","ror":"https://ror.org/01xsqw823","country_code":"GB","type":"company","lineage":["https://openalex.org/I188950975"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin Whittle","raw_affiliation_strings":["Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom","institution_ids":["https://openalex.org/I188950975","https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058775651","display_name":"Gianpaolo Bravi","orcid":null},"institutions":[{"id":"https://openalex.org/I188950975","display_name":"GlaxoSmithKline (United Kingdom)","ror":"https://ror.org/01xsqw823","country_code":"GB","type":"company","lineage":["https://openalex.org/I188950975"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gianpaolo Bravi","raw_affiliation_strings":["Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom","institution_ids":["https://openalex.org/I188950975","https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036729806","display_name":"Andrew R. Leach","orcid":"https://orcid.org/0000-0001-8178-0253"},"institutions":[{"id":"https://openalex.org/I188950975","display_name":"GlaxoSmithKline (United Kingdom)","ror":"https://ror.org/01xsqw823","country_code":"GB","type":"company","lineage":["https://openalex.org/I188950975"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew R. Leach","raw_affiliation_strings":["Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Studies, University of Sheffield, Western Bank, Sheffield, S10 2TN, United Kingdom, and GlaxoSmithKline, Gunnels Wood Road, Stevenage, SG1 2NY, United Kingdom","institution_ids":["https://openalex.org/I188950975","https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5030046388"],"corresponding_institution_ids":["https://openalex.org/I188950975","https://openalex.org/I91136226"],"apc_list":null,"apc_paid":null,"fwci":9.9349,"has_fulltext":false,"cited_by_count":60,"citation_normalized_percentile":{"value":0.98392532,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"48","issue":"4","first_page":"719","last_page":"729"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7895512580871582},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5911088585853577},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5852553248405457},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5570454001426697},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41983354091644287},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4100340008735657},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4004599153995514},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3263475298881531},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.287747323513031},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.23104140162467957},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1065930724143982},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.07357722520828247}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7895512580871582},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5911088585853577},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5852553248405457},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5570454001426697},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41983354091644287},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4100340008735657},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4004599153995514},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3263475298881531},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.287747323513031},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.23104140162467957},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1065930724143982},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.07357722520828247},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1021/ci700130j","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci700130j","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:18351728","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18351728","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320307773","display_name":"GlaxoSmithKline","ror":"https://ror.org/01xsqw823"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1491938055","https://openalex.org/W1529971426","https://openalex.org/W1575639801","https://openalex.org/W1595350250","https://openalex.org/W1978333379","https://openalex.org/W1978644181","https://openalex.org/W1980069772","https://openalex.org/W1985067238","https://openalex.org/W1987027966","https://openalex.org/W1990065809","https://openalex.org/W1996770801","https://openalex.org/W2005685204","https://openalex.org/W2021748110","https://openalex.org/W2026910177","https://openalex.org/W2029296498","https://openalex.org/W2031372687","https://openalex.org/W2033160647","https://openalex.org/W2060531713","https://openalex.org/W2061360855","https://openalex.org/W2063060349","https://openalex.org/W2075186867","https://openalex.org/W2081050523","https://openalex.org/W2082670236","https://openalex.org/W2093257291","https://openalex.org/W2096725584","https://openalex.org/W2120540345","https://openalex.org/W2125253492","https://openalex.org/W2125792789","https://openalex.org/W2130479394","https://openalex.org/W2139293075","https://openalex.org/W2144659448","https://openalex.org/W2159822007","https://openalex.org/W2179066627","https://openalex.org/W2203775767","https://openalex.org/W2214067381","https://openalex.org/W2215268165","https://openalex.org/W4230274588","https://openalex.org/W4245602869"],"related_works":["https://openalex.org/W3180887190","https://openalex.org/W2320211095","https://openalex.org/W2308164565","https://openalex.org/W2062768126","https://openalex.org/W2922499735","https://openalex.org/W3003855012","https://openalex.org/W1566373881","https://openalex.org/W1557343999","https://openalex.org/W2347569454","https://openalex.org/W4241018400"],"abstract_inverted_index":{"Three":[0],"field-based":[1],"similarity":[2,66,69],"methods":[3,12,112,126],"are":[4,13,34,53],"compared":[5,114],"in":[6,36,44],"retrospective":[7],"virtual":[8],"screening":[9],"experiments.":[10],"The":[11,32],"the":[14,26,45,82,93,105,110,116,124,137,143],"CatShape":[15],"module":[16],"of":[17,28],"CATALYST,":[18],"ROCS,":[19],"and":[20,39,68,90,101],"an":[21],"in-house":[22],"program":[23],"developed":[24],"at":[25],"University":[27],"Sheffield":[29],"called":[30],"FBSS.":[31],"programs":[33],"used":[35,55,76],"both":[37],"rigid":[38,117,134],"flexible":[40,111,125],"searches":[41],"carried":[42],"out":[43],"MDL":[46],"Drug":[47],"Data":[48],"Report.":[49],"UNITY":[50,87],"2D":[51,88],"fingerprints":[52,89],"also":[54],"to":[56,65,77,104],"provide":[57,78],"a":[58,61,79],"comparison":[59],"with":[60,92,115],"more":[62,83],"traditional":[63],"approach":[64],"searching,":[67],"based":[70],"on":[71],"simple":[72],"whole-molecule":[73],"properties":[74],"is":[75],"baseline":[80],"for":[81],"sophisticated":[84],"searches.":[85],"Overall,":[86],"ROCS":[91],"chemical":[94],"force":[95],"field":[96],"option":[97],"gave":[98,127],"comparable":[99],"performance":[100,139],"were":[102,113],"superior":[103],"shape-only":[106],"3D":[107],"methods.":[108],"When":[109],"methods,":[118],"it":[119],"was":[120],"generally":[121],"found":[122],"that":[123],"slightly":[128],"better":[129],"results":[130],"than":[131],"their":[132],"respective":[133],"methods;":[135],"however,":[136],"increased":[138],"did":[140],"not":[141],"justify":[142],"additional":[144],"computational":[145],"cost":[146],"required.":[147]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":9}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
