{"id":"https://openalex.org/W2028753512","doi":"https://doi.org/10.1021/ci700120v","title":"MolDiA:\u2009 A Novel Molecular Diversity Analysis Tool. 1. Principles and Architecture","display_name":"MolDiA:\u2009 A Novel Molecular Diversity Analysis Tool. 1. Principles and Architecture","publication_year":2007,"publication_date":"2007-11-01","ids":{"openalex":"https://openalex.org/W2028753512","doi":"https://doi.org/10.1021/ci700120v","mag":"2028753512","pmid":"https://pubmed.ncbi.nlm.nih.gov/17979264"},"language":"en","primary_location":{"id":"doi:10.1021/ci700120v","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci700120v","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006240617","display_name":"Ana G. Maldonado","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124942","display_name":"Interfaces Traitements Organisation et Dynamique des Syst\u00e8mes","ror":"https://ror.org/03edms940","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210124942","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Ana G. Maldonado","raw_affiliation_strings":["ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210124942","https://openalex.org/I204730241","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112285224","display_name":"Jean\u2010Pierre Doucet","orcid":null},"institutions":[{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210124942","display_name":"Interfaces Traitements Organisation et Dynamique des Syst\u00e8mes","ror":"https://ror.org/03edms940","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210124942","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Pierre Doucet","raw_affiliation_strings":["ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210124942","https://openalex.org/I204730241","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052429302","display_name":"Michel Petitjean","orcid":"https://orcid.org/0000-0002-1745-5402"},"institutions":[{"id":"https://openalex.org/I4210124942","display_name":"Interfaces Traitements Organisation et Dynamique des Syst\u00e8mes","ror":"https://ror.org/03edms940","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210124942","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Michel Petitjean","raw_affiliation_strings":["ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210124942","https://openalex.org/I204730241","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111393243","display_name":"Bo\u2010Tao Fan","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210124942","display_name":"Interfaces Traitements Organisation et Dynamique des Syst\u00e8mes","ror":"https://ror.org/03edms940","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210124942","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bo-Tao Fan","raw_affiliation_strings":["ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France"],"affiliations":[{"raw_affiliation_string":"ITODYS, Universit\u00e9 Paris 7 \u2212 Denis Diderot, CNRS UMR-7086, 1 rue Guy de la Brosse, 75005 Paris, France","institution_ids":["https://openalex.org/I169173203","https://openalex.org/I4210124942","https://openalex.org/I204730241","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006240617"],"corresponding_institution_ids":["https://openalex.org/I4210124942","https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I169173203"],"apc_list":null,"apc_paid":null,"fwci":0.67994997,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.67331102,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"47","issue":"6","first_page":"2197","last_page":"2207"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7454731464385986},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.7130624055862427},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5250746607780457},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4842686057090759},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.47023245692253113},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.4406382739543915},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4131312072277069},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35433730483055115},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2052071988582611},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1347833275794983},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11623737215995789}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7454731464385986},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.7130624055862427},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5250746607780457},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4842686057090759},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.47023245692253113},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.4406382739543915},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4131312072277069},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35433730483055115},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2052071988582611},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1347833275794983},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11623737215995789},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci700120v","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci700120v","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:17979264","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17979264","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W623814603","https://openalex.org/W1978811796","https://openalex.org/W1987752375","https://openalex.org/W1993492933","https://openalex.org/W1999054993","https://openalex.org/W2002842896","https://openalex.org/W2005685204","https://openalex.org/W2008734993","https://openalex.org/W2010595835","https://openalex.org/W2019504379","https://openalex.org/W2020685631","https://openalex.org/W2021083597","https://openalex.org/W2021197475","https://openalex.org/W2032992227","https://openalex.org/W2052943632","https://openalex.org/W2070505319","https://openalex.org/W2070909050","https://openalex.org/W2072337803","https://openalex.org/W2084453472","https://openalex.org/W2096729078","https://openalex.org/W2127121938","https://openalex.org/W2130941503","https://openalex.org/W2137762318","https://openalex.org/W2158024647","https://openalex.org/W2166478947","https://openalex.org/W2170966614","https://openalex.org/W2203775767","https://openalex.org/W2214015925","https://openalex.org/W2949243165","https://openalex.org/W2949435151","https://openalex.org/W3147295069","https://openalex.org/W3151941575","https://openalex.org/W4237142329"],"related_works":["https://openalex.org/W2375480909","https://openalex.org/W2588198209","https://openalex.org/W2353314428","https://openalex.org/W3200723557","https://openalex.org/W2012019886","https://openalex.org/W1909006023","https://openalex.org/W2166090428","https://openalex.org/W2381021552","https://openalex.org/W4205824991","https://openalex.org/W2354749003"],"abstract_inverted_index":{"We":[0,101],"introduce":[1],"the":[2,5,19,58,74,86,106,116,121,125,129,136,153],"principles":[3],"and":[4,66,93,114,134,151,156],"architecture":[6,56],"of":[7,21,31,39,60,69,88,97,118,120,138,143,158],"a":[8,94],"user-friendly":[9],"software":[10],"named":[11],"MOLDIA":[12,35],"(Molecular":[13],"Diversity":[14],"Analysis)":[15],"which":[16,43],"aims":[17],"to":[18,72,127,131,149],"comparison":[20,123],"diverse":[22],"molecular":[23,64,122],"data":[24,76],"sets":[25],"through":[26],"an":[27],"XML":[28,144],"structured":[29],"database":[30],"predefined":[32],"fragments.":[33],"The":[34,54,141],"descriptors":[36,65],"are":[37],"composed":[38],"complex":[40],"fingerprint-like":[41],"structures,":[42],"enclose":[44],"not":[45],"only":[46],"structural":[47,110],"information":[48],"but":[49],"also":[50],"physicochemical":[51],"property":[52],"data.":[53],"system":[55,96],"includes":[57],"use":[59,87],"customizable":[61],"weights":[62,113],"on":[63],"different":[67],"choices":[68],"similarity/diversity":[70,107],"measures":[71],"analyze":[73],"given":[75],"sets.":[77],"Intermolecular":[78],"comparisons":[79],"using":[80,109],"Ullmann's":[81],"algorithm":[82],"were":[83],"optimized":[84],"by":[85],"fuzzy":[89],"logic,":[90],"generic":[91],"atoms,":[92],"whole":[95],"chemical":[98,159],"graph":[99],"analysis.":[100],"have":[102],"found":[103],"that":[104],"customizing":[105],"computation":[108],"and/or":[111],"properties":[112],"choosing":[115],"level":[117],"fuzziness":[119],"allow":[124],"user":[126],"adapt":[128],"tool":[130],"particular":[132],"needs":[133],"increases":[135],"possibilities":[137],"MolDiA":[139],"applications.":[140],"implementation":[142],"Web":[145],"technologies":[146],"has":[147],"proven":[148],"improve":[150],"ease":[152],"extraction,":[154],"processing,":[155],"analysis":[157],"information.":[160]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
