{"id":"https://openalex.org/W1970742760","doi":"https://doi.org/10.1021/ci600427x","title":"Radial Clustergrams:\u2009 Visualizing the Aggregate Properties of Hierarchical Clusters","display_name":"Radial Clustergrams:\u2009 Visualizing the Aggregate Properties of Hierarchical Clusters","publication_year":2006,"publication_date":"2006-12-24","ids":{"openalex":"https://openalex.org/W1970742760","doi":"https://doi.org/10.1021/ci600427x","mag":"1970742760","pmid":"https://pubmed.ncbi.nlm.nih.gov/17238250"},"language":"en","primary_location":{"id":"doi:10.1021/ci600427x","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci600427x","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053892487","display_name":"Dimitris K. Agrafiotis","orcid":"https://orcid.org/0000-0002-5604-5692"},"institutions":[{"id":"https://openalex.org/I1330063522","display_name":"Johnson & Johnson (United States)","ror":"https://ror.org/03qd7mz70","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dimitris K. Agrafiotis","raw_affiliation_strings":["Johnson & Johnson Pharmaceutical Research & Development, L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341","Johnson & Johnson Pharmaceutical Research & Development L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341, USA"],"affiliations":[{"raw_affiliation_string":"Johnson & Johnson Pharmaceutical Research & Development, L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341","institution_ids":["https://openalex.org/I1330063522"]},{"raw_affiliation_string":"Johnson & Johnson Pharmaceutical Research & Development L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052974651","display_name":"Deepak Bandyopadhyay","orcid":"https://orcid.org/0000-0002-8747-369X"},"institutions":[{"id":"https://openalex.org/I1330063522","display_name":"Johnson & Johnson (United States)","ror":"https://ror.org/03qd7mz70","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deepak Bandyopadhyay","raw_affiliation_strings":["Johnson & Johnson Pharmaceutical Research & Development, L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341"],"affiliations":[{"raw_affiliation_string":"Johnson & Johnson Pharmaceutical Research & Development, L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341","institution_ids":["https://openalex.org/I1330063522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089486050","display_name":"Michael Farnum","orcid":null},"institutions":[{"id":"https://openalex.org/I1330063522","display_name":"Johnson & Johnson (United States)","ror":"https://ror.org/03qd7mz70","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Farnum","raw_affiliation_strings":["Johnson & Johnson Pharmaceutical Research & Development, L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341"],"affiliations":[{"raw_affiliation_string":"Johnson & Johnson Pharmaceutical Research & Development, L.L.C., 665 Stockton Drive, Exton, Pennsylvania 19341","institution_ids":["https://openalex.org/I1330063522"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053892487"],"corresponding_institution_ids":["https://openalex.org/I1330063522"],"apc_list":null,"apc_paid":null,"fwci":3.1617,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.92036762,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"47","issue":"1","first_page":"69","last_page":"75"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9154000282287598,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10487","display_name":"Plant and animal studies","score":0.9104999899864197,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7203688025474548},{"id":"https://openalex.org/keywords/adjacency-list","display_name":"Adjacency list","score":0.7050573229789734},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6524165868759155},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.5055487155914307},{"id":"https://openalex.org/keywords/aggregate","display_name":"Aggregate (composite)","score":0.4998598098754883},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.45992928743362427},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4592883288860321},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4556056559085846},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4464091658592224},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.44210436940193176},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3963547348976135},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3652912974357605},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32906657457351685},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.23590388894081116},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2261364459991455},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.12091252207756042},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.11954805254936218}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7203688025474548},{"id":"https://openalex.org/C110484373","wikidata":"https://www.wikidata.org/wiki/Q264398","display_name":"Adjacency list","level":2,"score":0.7050573229789734},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6524165868759155},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.5055487155914307},{"id":"https://openalex.org/C4679612","wikidata":"https://www.wikidata.org/wiki/Q866298","display_name":"Aggregate (composite)","level":2,"score":0.4998598098754883},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.45992928743362427},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4592883288860321},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4556056559085846},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4464091658592224},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.44210436940193176},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3963547348976135},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3652912974357605},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32906657457351685},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.23590388894081116},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2261364459991455},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.12091252207756042},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.11954805254936218},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/ci600427x","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci600427x","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:17238250","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17238250","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.89.1162","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.89.1162","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.dimitris-agrafiotis.com/Papers/jcim-2007-47-69.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1916851","https://openalex.org/W133851887","https://openalex.org/W190320872","https://openalex.org/W1498227543","https://openalex.org/W1507858957","https://openalex.org/W1541765387","https://openalex.org/W1553258895","https://openalex.org/W1567056755","https://openalex.org/W1650490230","https://openalex.org/W1651093245","https://openalex.org/W1679913846","https://openalex.org/W1916757608","https://openalex.org/W1939831422","https://openalex.org/W1973038589","https://openalex.org/W1974373855","https://openalex.org/W1985588322","https://openalex.org/W1991476611","https://openalex.org/W1992419399","https://openalex.org/W2000376564","https://openalex.org/W2005402290","https://openalex.org/W2005685204","https://openalex.org/W2007304801","https://openalex.org/W2022762253","https://openalex.org/W2024044281","https://openalex.org/W2026506423","https://openalex.org/W2041620837","https://openalex.org/W2051177477","https://openalex.org/W2062937620","https://openalex.org/W2076590446","https://openalex.org/W2077583250","https://openalex.org/W2083896568","https://openalex.org/W2087595965","https://openalex.org/W2089463122","https://openalex.org/W2102798042","https://openalex.org/W2104252183","https://openalex.org/W2106441507","https://openalex.org/W2106588364","https://openalex.org/W2124009048","https://openalex.org/W2134738108","https://openalex.org/W2135294669","https://openalex.org/W2144084698","https://openalex.org/W2147468287","https://openalex.org/W2150926065","https://openalex.org/W2156136663","https://openalex.org/W2161581092","https://openalex.org/W2163449287","https://openalex.org/W2177658341","https://openalex.org/W2294634838","https://openalex.org/W2499419648","https://openalex.org/W3147295069","https://openalex.org/W4213332169","https://openalex.org/W4229830733","https://openalex.org/W4231655980","https://openalex.org/W4236888462","https://openalex.org/W4313822113","https://openalex.org/W4320065062"],"related_works":["https://openalex.org/W2611163850","https://openalex.org/W1980812295","https://openalex.org/W3015250136","https://openalex.org/W1845849701","https://openalex.org/W2044218713","https://openalex.org/W2625268413","https://openalex.org/W2962989220","https://openalex.org/W2379234996","https://openalex.org/W4247900000","https://openalex.org/W1985727224"],"abstract_inverted_index":{"A":[0,116],"new":[1],"radial":[2,17],"space-filling":[3],"method":[4,138],"for":[5],"visualizing":[6],"cluster":[7,61,74],"hierarchies":[8],"is":[9,119,139],"presented.":[10],"The":[11,134],"method,":[12],"referred":[13],"to":[14,43,53,56,82,97,121],"as":[15],"a":[16,23,29],"clustergram,":[18],"arranges":[19],"the":[20,33,68,114,131,137,144],"clusters":[21],"into":[22],"series":[24],"of":[25,32,38,41,60,72,94,110,125,130,136,146],"layers,":[26],"each":[27,54],"representing":[28],"different":[30],"level":[31],"tree.":[34,115],"It":[35],"uses":[36],"adjacency":[37],"nodes":[39,111],"instead":[40],"links":[42],"represent":[44],"parent-child":[45],"relationships":[46],"and":[47,85,107,149],"allocates":[48],"sufficient":[49],"screen":[50],"real":[51],"estate":[52],"node":[55],"allow":[57],"effective":[58,102],"visualization":[59,75],"properties":[62,109],"through":[63],"color-coding.":[64],"Radial":[65],"clustergrams":[66],"combine":[67],"most":[69],"appealing":[70],"features":[71],"other":[73],"techniques":[76],"but":[77],"avoid":[78],"their":[79],"pitfalls.":[80],"Compared":[81],"classical":[83],"dendrograms":[84],"hyperbolic":[86],"trees,":[87],"they":[88,99],"make":[89],"much":[90],"more":[91,101],"efficient":[92],"use":[93],"space;":[95],"compared":[96],"treemaps,":[98],"are":[100],"in":[103,113],"conveying":[104],"hierarchical":[105],"structure":[106],"displaying":[108],"higher":[112],"fisheye":[117],"lens":[118],"used":[120],"focus":[122],"on":[123],"areas":[124],"interest,":[126],"without":[127],"losing":[128],"sight":[129],"global":[132],"context.":[133],"utility":[135],"demonstrated":[140],"using":[141],"examples":[142],"from":[143],"fields":[145],"molecular":[147],"diversity":[148],"conformational":[150],"analysis.":[151]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
