{"id":"https://openalex.org/W2073021822","doi":"https://doi.org/10.1021/ci500731a","title":"Classification of Current Scoring Functions","display_name":"Classification of Current Scoring Functions","publication_year":2015,"publication_date":"2015-02-03","ids":{"openalex":"https://openalex.org/W2073021822","doi":"https://doi.org/10.1021/ci500731a","mag":"2073021822","pmid":"https://pubmed.ncbi.nlm.nih.gov/25647463"},"language":"en","primary_location":{"id":"doi:10.1021/ci500731a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500731a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100454111","display_name":"Jie Liu","orcid":"https://orcid.org/0000-0002-4828-3244"},"institutions":[{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Liu","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Collaborative Innovation Center of Chemistry for Life Sciences, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Collaborative Innovation Center of Chemistry for Life Sciences, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016374232","display_name":"Renxiao Wang","orcid":"https://orcid.org/0000-0003-0485-0259"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]},{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Renxiao Wang","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Collaborative Innovation Center of Chemistry for Life Sciences, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China","State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Collaborative Innovation Center of Chemistry for Life Sciences, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]},{"raw_affiliation_string":"State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I111950717"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100454111"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210112946"],"apc_list":null,"apc_paid":null,"fwci":19.6473,"has_fulltext":false,"cited_by_count":304,"citation_normalized_percentile":{"value":0.99560743,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"55","issue":"3","first_page":"475","last_page":"482"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6018991470336914},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5690263509750366},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5366226434707642},{"id":"https://openalex.org/keywords/classification-scheme","display_name":"Classification scheme","score":0.4790676534175873},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40769606828689575},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3758031129837036},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21397051215171814},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.07784277200698853}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6018991470336914},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5690263509750366},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5366226434707642},{"id":"https://openalex.org/C13460635","wikidata":"https://www.wikidata.org/wiki/Q85753676","display_name":"Classification scheme","level":2,"score":0.4790676534175873},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40769606828689575},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3758031129837036},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21397051215171814},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.07784277200698853}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010825","descriptor_name":"Physics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010825","descriptor_name":"Physics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010825","descriptor_name":"Physics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci500731a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500731a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:25647463","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25647463","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5600000023841858}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":101,"referenced_works":["https://openalex.org/W1255705275","https://openalex.org/W1483621455","https://openalex.org/W1539947917","https://openalex.org/W1567411871","https://openalex.org/W1573009101","https://openalex.org/W1605578858","https://openalex.org/W1656114533","https://openalex.org/W1964958542","https://openalex.org/W1965207004","https://openalex.org/W1968302589","https://openalex.org/W1969017960","https://openalex.org/W1973098530","https://openalex.org/W1974324284","https://openalex.org/W1974885083","https://openalex.org/W1975017420","https://openalex.org/W1975580333","https://openalex.org/W1975875968","https://openalex.org/W1976271045","https://openalex.org/W1979046104","https://openalex.org/W1985588649","https://openalex.org/W1986466512","https://openalex.org/W1991588154","https://openalex.org/W1992856935","https://openalex.org/W1993285168","https://openalex.org/W1993403967","https://openalex.org/W1995808589","https://openalex.org/W1998568556","https://openalex.org/W2003356525","https://openalex.org/W2012084558","https://openalex.org/W2013085020","https://openalex.org/W2014704001","https://openalex.org/W2017043087","https://openalex.org/W2028609644","https://openalex.org/W2030286884","https://openalex.org/W2039316467","https://openalex.org/W2040990879","https://openalex.org/W2043604722","https://openalex.org/W2048207135","https://openalex.org/W2048214699","https://openalex.org/W2049185580","https://openalex.org/W2050456292","https://openalex.org/W2050629267","https://openalex.org/W2052030759","https://openalex.org/W2052226480","https://openalex.org/W2053759741","https://openalex.org/W2057633968","https://openalex.org/W2062598572","https://openalex.org/W2064045850","https://openalex.org/W2066515324","https://openalex.org/W2066583787","https://openalex.org/W2067484324","https://openalex.org/W2067732724","https://openalex.org/W2071557543","https://openalex.org/W2075020622","https://openalex.org/W2079685391","https://openalex.org/W2085764610","https://openalex.org/W2090847673","https://openalex.org/W2091646933","https://openalex.org/W2091778154","https://openalex.org/W2092285329","https://openalex.org/W2096541451","https://openalex.org/W2096560421","https://openalex.org/W2096864392","https://openalex.org/W2102377211","https://openalex.org/W2105527266","https://openalex.org/W2108257090","https://openalex.org/W2111078532","https://openalex.org/W2114162221","https://openalex.org/W2116903488","https://openalex.org/W2117620409","https://openalex.org/W2118302570","https://openalex.org/W2118587156","https://openalex.org/W2122199548","https://openalex.org/W2127553917","https://openalex.org/W2128332459","https://openalex.org/W2130479394","https://openalex.org/W2137841449","https://openalex.org/W2138015848","https://openalex.org/W2142820798","https://openalex.org/W2143482176","https://openalex.org/W2146465875","https://openalex.org/W2148512505","https://openalex.org/W2155275960","https://openalex.org/W2155524113","https://openalex.org/W2159637896","https://openalex.org/W2162166182","https://openalex.org/W2163498131","https://openalex.org/W2169562071","https://openalex.org/W2171234651","https://openalex.org/W2202155158","https://openalex.org/W2211272170","https://openalex.org/W2283229322","https://openalex.org/W2314972145","https://openalex.org/W2329862012","https://openalex.org/W2515184929","https://openalex.org/W2949504121","https://openalex.org/W2952663663","https://openalex.org/W2993880730","https://openalex.org/W4235088860","https://openalex.org/W4250830547","https://openalex.org/W4251259143"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3209574120","https://openalex.org/W3107602296","https://openalex.org/W4312192474","https://openalex.org/W4210805261","https://openalex.org/W4387297750"],"abstract_inverted_index":{"Scoring":[0],"functions":[1,21,32,83],"are":[2,33],"a":[3,50],"class":[4],"of":[5,19,81,147],"computational":[6],"methods":[7],"widely":[8],"applied":[9],"in":[10,69,88],"structure-based":[11],"drug":[12],"design":[13],"for":[14,47,77,94,113],"evaluating":[15],"protein-ligand":[16],"interactions.":[17],"Dozens":[18],"scoring":[20,31,82,115,128,134,148],"have":[22],"been":[23,45,85],"published":[24],"since":[25],"the":[26,66,73,139],"early":[27],"1990s.":[28],"In":[29],"literature,":[30,89],"typically":[34],"classified":[35,123],"as":[36],"force-field-based,":[37],"empirical,":[38],"and":[39,52,109,132,142],"knowledge-based.":[40],"This":[41],"classification":[42,107],"scheme":[43,108],"has":[44,84],"quoted":[46,56],"more":[48],"than":[49],"decade":[51],"is":[53],"still":[54],"repeatedly":[55],"by":[57],"some":[58],"recent":[59,67],"publications.":[60],"Unfortunately,":[61],"it":[62],"does":[63],"not":[64],"reflect":[65],"progress":[68],"this":[70,97],"field.":[71,98],"Besides,":[72],"naming":[74,111],"convention":[75,112],"used":[76],"describing":[78],"different":[79,145],"types":[80],"somewhat":[86],"jumbled":[87],"which":[90],"could":[91],"be":[92,122],"confusing":[93],"newcomers":[95],"to":[96],"Here,":[99],"we":[100],"express":[101],"our":[102],"viewpoint":[103],"on":[104],"an":[105],"up-to-date":[106],"appropriate":[110],"current":[114],"functions.":[116,135,149],"We":[117,136],"propose":[118],"that":[119],"they":[120],"can":[121],"into":[124],"physics-based":[125],"methods,":[126],"empirical":[127],"functions,":[129],"knowledge-based":[130],"potentials,":[131],"descriptor-based":[133],"also":[137],"outline":[138],"major":[140],"difference":[141],"connections":[143],"between":[144],"categories":[146]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":45},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":45},{"year":2020,"cited_by_count":32},{"year":2019,"cited_by_count":32},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":17},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":9}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
