{"id":"https://openalex.org/W1977032877","doi":"https://doi.org/10.1021/ci500673z","title":"Computational Modeling of Kinesin Stepping","display_name":"Computational Modeling of Kinesin Stepping","publication_year":2014,"publication_date":"2014-11-15","ids":{"openalex":"https://openalex.org/W1977032877","doi":"https://doi.org/10.1021/ci500673z","mag":"1977032877","pmid":"https://pubmed.ncbi.nlm.nih.gov/25400227"},"language":"en","primary_location":{"id":"doi:10.1021/ci500673z","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500673z","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079085442","display_name":"H. R. Khataee","orcid":null},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Hamidreza Khataee","raw_affiliation_strings":["School of Information and\rCommunication Technology, Gold Coast Campus, Griffith University, Gold Coast, Queensland 4222, Australia","School of Information and Communication Technology, Gold Coast Campus, Griffith University , Gold Coast, Queensland 4222, Australia"],"affiliations":[{"raw_affiliation_string":"School of Information and\rCommunication Technology, Gold Coast Campus, Griffith University, Gold Coast, Queensland 4222, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"School of Information and Communication Technology, Gold Coast Campus, Griffith University , Gold Coast, Queensland 4222, Australia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091254555","display_name":"Alan Wee\u2010Chung Liew","orcid":"https://orcid.org/0000-0001-6718-7584"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Alan Wee-Chung Liew","raw_affiliation_strings":["School of Information and\rCommunication Technology, Gold Coast Campus, Griffith University, Gold Coast, Queensland 4222, Australia","School of Information and#R#Communication Technology, Gold Coast Campus, Griffith University, Gold Coast, Queensland 4222, Australia"],"affiliations":[{"raw_affiliation_string":"School of Information and\rCommunication Technology, Gold Coast Campus, Griffith University, Gold Coast, Queensland 4222, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"School of Information and#R#Communication Technology, Gold Coast Campus, Griffith University, Gold Coast, Queensland 4222, Australia","institution_ids":["https://openalex.org/I11701301"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5079085442"],"corresponding_institution_ids":["https://openalex.org/I11701301"],"apc_list":null,"apc_paid":null,"fwci":0.5509,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.66288598,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"54","issue":"12","first_page":"3439","last_page":"3445"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11486","display_name":"Micro and Nano Robotics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/3104","display_name":"Condensed Matter Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11486","display_name":"Micro and Nano Robotics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/3104","display_name":"Condensed Matter Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinesin","display_name":"Kinesin","score":0.9598960280418396},{"id":"https://openalex.org/keywords/atp-hydrolysis","display_name":"ATP hydrolysis","score":0.7656897306442261},{"id":"https://openalex.org/keywords/microtubule","display_name":"Microtubule","score":0.72206711769104},{"id":"https://openalex.org/keywords/adenosine-triphosphate","display_name":"Adenosine triphosphate","score":0.6453626155853271},{"id":"https://openalex.org/keywords/molecular-motor","display_name":"Molecular motor","score":0.6134825944900513},{"id":"https://openalex.org/keywords/motor-protein","display_name":"Motor protein","score":0.5597107410430908},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.4478057622909546},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.438295841217041},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.4173493981361389},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3756796419620514},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3471751809120178},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21964791417121887},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.18303734064102173},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15822437405586243},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.14398139715194702},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10427922010421753},{"id":"https://openalex.org/keywords/atpase","display_name":"ATPase","score":0.08551785349845886},{"id":"https://openalex.org/keywords/mechanical-engineering","display_name":"Mechanical engineering","score":0.06975293159484863}],"concepts":[{"id":"https://openalex.org/C59006786","wikidata":"https://www.wikidata.org/wiki/Q15319390","display_name":"Kinesin","level":3,"score":0.9598960280418396},{"id":"https://openalex.org/C141315368","wikidata":"https://www.wikidata.org/wiki/Q4654881","display_name":"ATP hydrolysis","level":4,"score":0.7656897306442261},{"id":"https://openalex.org/C20418707","wikidata":"https://www.wikidata.org/wiki/Q189933","display_name":"Microtubule","level":2,"score":0.72206711769104},{"id":"https://openalex.org/C2779564974","wikidata":"https://www.wikidata.org/wiki/Q80863","display_name":"Adenosine triphosphate","level":2,"score":0.6453626155853271},{"id":"https://openalex.org/C160408235","wikidata":"https://www.wikidata.org/wiki/Q423905","display_name":"Molecular motor","level":2,"score":0.6134825944900513},{"id":"https://openalex.org/C93126451","wikidata":"https://www.wikidata.org/wiki/Q2383767","display_name":"Motor protein","level":3,"score":0.5597107410430908},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.4478057622909546},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.438295841217041},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.4173493981361389},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3756796419620514},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3471751809120178},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21964791417121887},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.18303734064102173},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15822437405586243},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.14398139715194702},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10427922010421753},{"id":"https://openalex.org/C23265538","wikidata":"https://www.wikidata.org/wiki/Q300033","display_name":"ATPase","level":3,"score":0.08551785349845886},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.06975293159484863}],"mesh":[{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008870","descriptor_name":"Microtubules","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008870","descriptor_name":"Microtubules","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008870","descriptor_name":"Microtubules","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016547","descriptor_name":"Kinesins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016547","descriptor_name":"Kinesins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016547","descriptor_name":"Kinesins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/ci500673z","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500673z","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:25400227","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25400227","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:f3b305c","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/66604","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/66604","pdf_url":null,"source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.41999998688697815}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320981","display_name":"Griffith University","ror":"https://ror.org/02sc3r913"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1487659884","https://openalex.org/W1505749614","https://openalex.org/W1593716142","https://openalex.org/W1607189814","https://openalex.org/W1608140663","https://openalex.org/W1910080853","https://openalex.org/W1966790730","https://openalex.org/W1967609633","https://openalex.org/W1969950964","https://openalex.org/W1972686833","https://openalex.org/W1973360544","https://openalex.org/W1982003147","https://openalex.org/W1995870437","https://openalex.org/W1997012328","https://openalex.org/W1999018037","https://openalex.org/W2001060611","https://openalex.org/W2012708339","https://openalex.org/W2014433297","https://openalex.org/W2014965368","https://openalex.org/W2018036523","https://openalex.org/W2019606851","https://openalex.org/W2025544995","https://openalex.org/W2037207437","https://openalex.org/W2040170698","https://openalex.org/W2052309340","https://openalex.org/W2056707942","https://openalex.org/W2057915370","https://openalex.org/W2059438324","https://openalex.org/W2062481506","https://openalex.org/W2090047847","https://openalex.org/W2090393740","https://openalex.org/W2091563255","https://openalex.org/W2105252372","https://openalex.org/W2107421715","https://openalex.org/W2120293999","https://openalex.org/W2124852145","https://openalex.org/W2133856701","https://openalex.org/W2139762024","https://openalex.org/W2140187426","https://openalex.org/W2146156928","https://openalex.org/W2156785175","https://openalex.org/W2158844394","https://openalex.org/W2158959564","https://openalex.org/W2166454051","https://openalex.org/W2167387669","https://openalex.org/W2312578352","https://openalex.org/W2326782874","https://openalex.org/W2329813562","https://openalex.org/W4206836857"],"related_works":["https://openalex.org/W2950045261","https://openalex.org/W2172014355","https://openalex.org/W2041611884","https://openalex.org/W2531115716","https://openalex.org/W2036547507","https://openalex.org/W2611070079","https://openalex.org/W2060472988","https://openalex.org/W2006683232","https://openalex.org/W4291821135","https://openalex.org/W3204543298"],"abstract_inverted_index":{"Kinesin":[0],"is":[1,15,75,91,141],"a":[2,35,53],"walking":[3],"motor":[4,51,171],"protein":[5,14],"that":[6,69,93,115,130,156],"shuttles":[7],"cellular":[8,24],"cargoes":[9],"along":[10],"microtubules":[11],"(MTs).":[12],"This":[13],"considered":[16],"as":[17,52],"an":[18,59],"information":[19],"processor":[20],"capable":[21],"of":[22,49,73,87,120,134,169],"sensing":[23],"inputs":[25],"and":[26,45,107,165,175],"transforming":[27],"them":[28],"into":[29],"mechanical":[30],"steps.":[31],"Here,":[32],"we":[33],"propose":[34],"computational":[36,159],"model":[37,160],"to":[38,97],"describe":[39],"the":[40,70,85,131,157,163],"mechanochemical":[41],"kinetics":[42],"underlying":[43],"forward":[44,164],"backward":[46,71,109,125,166],"stepping":[47,72,167],"behavior":[48,168],"kinesin":[50,74,94,135,170],"digital":[54],"circuit":[55],"designed":[56],"based":[57],"on":[58],"adenosine":[60],"triphosphate":[61],"(ATP)-driven":[62],"finite":[63],"state":[64,140],"machine.":[65],"Kinetic":[66],"analysis":[67],"suggests":[68],"mainly":[76],"driven":[77],"by":[78,117,143],"ATP":[79,82,100,104,121],"hydrolysis,":[80],"whereas":[81],"synthesis":[83,122],"rises":[84],"duration":[86,133],"this":[88],"stepping.":[89],"It":[90],"shown":[92],"pausing":[95,132],"due":[96],"waiting":[98],"for":[99],"binding":[101],"at":[102,151],"limiting":[103],"concentration":[105],"([ATP])":[106],"low":[108,118],"loads":[110],"could":[111],"be":[112],"longer":[113],"than":[114],"caused":[116],"rate":[119],"under":[123,172],"high":[124],"loads.":[126,153,176],"These":[127],"findings":[128],"indicate":[129],"in":[136,146],"MT-bound":[137],"(M\u00b7K)":[138],"kinetic":[139],"affected":[142],"[ATP],":[144],"which":[145],"turn":[147],"affects":[148],"its":[149],"velocity":[150],"fixed":[152],"We":[154],"show":[155],"proposed":[158],"accurately":[161],"simulates":[162],"different":[173],"[ATP]":[174]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
