{"id":"https://openalex.org/W2049451881","doi":"https://doi.org/10.1021/ci500380a","title":"The Impact of Side-Chain Packing on Protein Docking Refinement","display_name":"The Impact of Side-Chain Packing on Protein Docking Refinement","publication_year":2015,"publication_date":"2015-02-25","ids":{"openalex":"https://openalex.org/W2049451881","doi":"https://doi.org/10.1021/ci500380a","mag":"2049451881","pmid":"https://pubmed.ncbi.nlm.nih.gov/25714358"},"language":"en","primary_location":{"id":"doi:10.1021/ci500380a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500380a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026124061","display_name":"Mohammad Naser\u2010Moghadasi","orcid":"https://orcid.org/0000-0003-0282-2916"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mohammad Moghadasi","raw_affiliation_strings":["Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States"],"affiliations":[{"raw_affiliation_string":"Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027625983","display_name":"Hanieh Mirzaei","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanieh Mirzaei","raw_affiliation_strings":["Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States"],"affiliations":[{"raw_affiliation_string":"Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034466155","display_name":"Artem B. Mamonov","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Artem Mamonov","raw_affiliation_strings":["Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States"],"affiliations":[{"raw_affiliation_string":"Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002097523","display_name":"Pirooz Vakili","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pirooz Vakili","raw_affiliation_strings":["Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States"],"affiliations":[{"raw_affiliation_string":"Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032985635","display_name":"S\u00e1ndor Vajda","orcid":"https://orcid.org/0000-0003-1540-8220"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sandor Vajda","raw_affiliation_strings":["Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States"],"affiliations":[{"raw_affiliation_string":"Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075696701","display_name":"Ioannis Ch. Paschalidis","orcid":"https://orcid.org/0000-0002-3343-2913"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ioannis Ch. Paschalidis","raw_affiliation_strings":["Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States"],"affiliations":[{"raw_affiliation_string":"Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States","institution_ids":["https://openalex.org/I111088046"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060147489","display_name":"Dima Kozakov","orcid":"https://orcid.org/0000-0003-0464-4500"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dima Kozakov","raw_affiliation_strings":["Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States"],"affiliations":[{"raw_affiliation_string":"Division of Systems\rEngineering, \u2021Center for Information and Systems Engineering, \u00a7Department of Biomedical\rEngineering, \u2225Department of Mechanical Engineering, and \u22a5Department of Electrical and Computer\rEngineering, Boston University, Boston, Massachusetts 02215, United States","institution_ids":["https://openalex.org/I111088046"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5026124061"],"corresponding_institution_ids":["https://openalex.org/I111088046"],"apc_list":null,"apc_paid":null,"fwci":1.4836,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.81876446,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"55","issue":"4","first_page":"872","last_page":"881"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7512792944908142},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6139967441558838},{"id":"https://openalex.org/keywords/side-chain","display_name":"Side chain","score":0.602488100528717},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.46385547518730164},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.44005492329597473},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.38137683272361755},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.37934044003486633},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3489993214607239},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14891716837882996},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11555185914039612}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7512792944908142},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6139967441558838},{"id":"https://openalex.org/C204921945","wikidata":"https://www.wikidata.org/wiki/Q899689","display_name":"Side chain","level":3,"score":0.602488100528717},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.46385547518730164},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.44005492329597473},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.38137683272361755},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.37934044003486633},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3489993214607239},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14891716837882996},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11555185914039612},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1021/ci500380a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500380a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:25714358","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25714358","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:europepmc.org:3810807","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4734134","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G2027390471","display_name":null,"funder_award_id":"CNS-1239021","funder_id":"https://openalex.org/F4320337388","funder_display_name":"Division of Computer and Network Systems"},{"id":"https://openalex.org/G2552743231","display_name":null,"funder_award_id":"N00014-10-1-0952","funder_id":"https://openalex.org/F4320337345","funder_display_name":"Office of Naval Research"},{"id":"https://openalex.org/G3880284734","display_name":null,"funder_award_id":"GM061867","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4830488746","display_name":null,"funder_award_id":"GM093147","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5031208370","display_name":null,"funder_award_id":"W911NF-12-1-0390","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G5786267907","display_name":null,"funder_award_id":"IIS-1237022","funder_id":"https://openalex.org/F4320337389","funder_display_name":"Division of Information and Intelligent Systems"},{"id":"https://openalex.org/G6377098844","display_name":null,"funder_award_id":"W911NF-11-1-0227","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G8188254797","display_name":null,"funder_award_id":"DBI-1147082","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337345","display_name":"Office of Naval Research","ror":"https://ror.org/00rk2pe57"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337388","display_name":"Division of Computer and Network Systems","ror":"https://ror.org/02rdzmk74"},{"id":"https://openalex.org/F4320337389","display_name":"Division of Information and Intelligent Systems","ror":"https://ror.org/053a2cp42"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1508596864","https://openalex.org/W1516916562","https://openalex.org/W1564062335","https://openalex.org/W1757046366","https://openalex.org/W1899503782","https://openalex.org/W1968430567","https://openalex.org/W1972728295","https://openalex.org/W1987977716","https://openalex.org/W2011658408","https://openalex.org/W2013238066","https://openalex.org/W2035282876","https://openalex.org/W2052789270","https://openalex.org/W2053128677","https://openalex.org/W2054265254","https://openalex.org/W2056257194","https://openalex.org/W2060361607","https://openalex.org/W2065101872","https://openalex.org/W2082221689","https://openalex.org/W2097031841","https://openalex.org/W2097649955","https://openalex.org/W2101395824","https://openalex.org/W2101712920","https://openalex.org/W2102328679","https://openalex.org/W2105438341","https://openalex.org/W2106648157","https://openalex.org/W2106775540","https://openalex.org/W2111387452","https://openalex.org/W2129454543","https://openalex.org/W2131900949","https://openalex.org/W2141818619","https://openalex.org/W2143099339","https://openalex.org/W2145154167","https://openalex.org/W2155400598","https://openalex.org/W2171249995","https://openalex.org/W2611076569","https://openalex.org/W4230223507"],"related_works":["https://openalex.org/W4280529929","https://openalex.org/W2946599741","https://openalex.org/W3187431608","https://openalex.org/W2593264178","https://openalex.org/W3171039768","https://openalex.org/W1974422922","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W2043066834"],"abstract_inverted_index":{"We":[0,83],"study":[1],"the":[2,6,10,17,22,35,98,106,115,122,137],"impact":[3],"of":[4,19,37,49,89,94,108,117],"optimizing":[5],"side-chain":[7,27,99,119,123],"positions":[8],"in":[9,34,121,128],"interface":[11],"region":[12],"between":[13,78],"two":[14],"proteins":[15],"during":[16],"process":[18,36],"binding.":[20],"Mathematically,":[21],"problem":[23,125],"is":[24,126,134],"similar":[25],"to":[26,136],"prediction,":[28],"which":[29],"has":[30,46],"been":[31],"extensively":[32],"explored":[33],"protein":[38],"structure":[39],"prediction.":[40],"The":[41,132],"protein-protein":[42],"docking":[43,109],"application,":[44],"however,":[45],"a":[47,63,76],"number":[48],"characteristics":[50],"that":[51,67,97,114],"necessitate":[52],"different":[53],"algorithmic":[54],"and":[55,74,80,91],"implementation":[56],"choices.":[57],"In":[58],"this":[59],"work,":[60],"we":[61,112],"implement":[62],"distributed":[64],"approximate":[65],"algorithm":[66,102],"can":[68],"be":[69],"implemented":[70],"on":[71,87],"multiprocessor":[72],"architectures":[73],"enables":[75],"trade-off":[77],"accuracy":[79],"running":[81],"speed.":[82],"report":[84],"computational":[85],"results":[86],"benchmarks":[88],"enzyme-inhibitor":[90],"other":[92],"types":[93],"complexes,":[95],"establishing":[96],"flexibility":[100],"our":[101],"introduces":[103],"substantially":[104],"improves":[105],"performance":[107,130],"protocols.":[110],"Furthermore,":[111],"establish":[113],"inclusion":[116],"unbound":[118],"conformers":[120],"positioning":[124],"critical":[127],"these":[129],"improvements.":[131],"code":[133],"available":[135],"community":[138],"under":[139],"open":[140],"source":[141],"license.":[142]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
