{"id":"https://openalex.org/W2083836648","doi":"https://doi.org/10.1021/ci500363p","title":"Enumeration of Ring\u2013Chain Tautomers Based on SMIRKS Rules","display_name":"Enumeration of Ring\u2013Chain Tautomers Based on SMIRKS Rules","publication_year":2014,"publication_date":"2014-08-26","ids":{"openalex":"https://openalex.org/W2083836648","doi":"https://doi.org/10.1021/ci500363p","mag":"2083836648","pmid":"https://pubmed.ncbi.nlm.nih.gov/25158156"},"language":"en","primary_location":{"id":"doi:10.1021/ci500363p","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500363p","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"publisher-specific-oa","license_id":"https://openalex.org/licenses/publisher-specific-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082708683","display_name":"Laura Guasch","orcid":"https://orcid.org/0000-0003-4990-7765"},"institutions":[{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Laura Guasch","raw_affiliation_strings":["Chemical Biology Laboratory, Center for Cancer Research, National\rCancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research , Frederick, Maryland 21702, United States"],"affiliations":[{"raw_affiliation_string":"Chemical Biology Laboratory, Center for Cancer Research, National\rCancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"raw_affiliation_string":"Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research , Frederick, Maryland 21702, United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048549754","display_name":"Markus Sitzmann","orcid":null},"institutions":[{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Markus Sitzmann","raw_affiliation_strings":["Chemical Biology Laboratory, Center for Cancer Research, National\rCancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","Chemical Biology Laboratory, Center for Cancer Research, National#R#Cancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States"],"affiliations":[{"raw_affiliation_string":"Chemical Biology Laboratory, Center for Cancer Research, National\rCancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"raw_affiliation_string":"Chemical Biology Laboratory, Center for Cancer Research, National#R#Cancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078864876","display_name":"Marc C. Nicklaus","orcid":"https://orcid.org/0000-0002-4775-7030"},"institutions":[{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc C. Nicklaus","raw_affiliation_strings":["Chemical Biology Laboratory, Center for Cancer Research, National\rCancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","Chemical Biology Laboratory, Center for Cancer Research, National#R#Cancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States"],"affiliations":[{"raw_affiliation_string":"Chemical Biology Laboratory, Center for Cancer Research, National\rCancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"raw_affiliation_string":"Chemical Biology Laboratory, Center for Cancer Research, National#R#Cancer Institute, National Institutes of Health, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082708683"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884","https://openalex.org/I4210149717"],"apc_list":null,"apc_paid":null,"fwci":3.2902,"has_fulltext":false,"cited_by_count":42,"citation_normalized_percentile":{"value":0.9230693,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"54","issue":"9","first_page":"2423","last_page":"2432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11567","display_name":"semigroups and automata theory","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11567","display_name":"semigroups and automata theory","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9498999714851379,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.9187663793563843},{"id":"https://openalex.org/keywords/ring","display_name":"Ring (chemistry)","score":0.6745336651802063},{"id":"https://openalex.org/keywords/tautomer","display_name":"Tautomer","score":0.6626909375190735},{"id":"https://openalex.org/keywords/chain","display_name":"Chain (unit)","score":0.5430997014045715},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.45296457409858704},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3913532495498657},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.31456416845321655},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28868699073791504},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.25907933712005615},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19814327359199524},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.12103164196014404}],"concepts":[{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.9187663793563843},{"id":"https://openalex.org/C2780378348","wikidata":"https://www.wikidata.org/wiki/Q25351438","display_name":"Ring (chemistry)","level":2,"score":0.6745336651802063},{"id":"https://openalex.org/C111233374","wikidata":"https://www.wikidata.org/wiki/Q334640","display_name":"Tautomer","level":2,"score":0.6626909375190735},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.5430997014045715},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.45296457409858704},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3913532495498657},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.31456416845321655},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28868699073791504},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.25907933712005615},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19814327359199524},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.12103164196014404},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003500","descriptor_name":"Cyclization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003500","descriptor_name":"Cyclization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003500","descriptor_name":"Cyclization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/ci500363p","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500363p","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"publisher-specific-oa","license_id":"https://openalex.org/licenses/publisher-specific-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:25158156","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25158156","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.793.8099","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.793.8099","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/b3/49/ci500363p.PMC4170818.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3515691","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4170818","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1516740401","https://openalex.org/W1968795072","https://openalex.org/W1969358692","https://openalex.org/W1970985989","https://openalex.org/W1983283443","https://openalex.org/W1990157913","https://openalex.org/W1993196260","https://openalex.org/W1993916625","https://openalex.org/W1995682044","https://openalex.org/W2004252237","https://openalex.org/W2005051631","https://openalex.org/W2012961504","https://openalex.org/W2016455326","https://openalex.org/W2020754851","https://openalex.org/W2021026407","https://openalex.org/W2023182702","https://openalex.org/W2025355661","https://openalex.org/W2029583153","https://openalex.org/W2038080389","https://openalex.org/W2038414704","https://openalex.org/W2041561720","https://openalex.org/W2050226017","https://openalex.org/W2051154845","https://openalex.org/W2052564836","https://openalex.org/W2053348554","https://openalex.org/W2060056002","https://openalex.org/W2062679632","https://openalex.org/W2063140507","https://openalex.org/W2066110452","https://openalex.org/W2071992316","https://openalex.org/W2073626515","https://openalex.org/W2078600753","https://openalex.org/W2081224760","https://openalex.org/W2088207447","https://openalex.org/W2095663170","https://openalex.org/W2104426111","https://openalex.org/W2118774275","https://openalex.org/W2124527578","https://openalex.org/W2131848047","https://openalex.org/W2154033129","https://openalex.org/W2155053956","https://openalex.org/W2157459568","https://openalex.org/W2209568211","https://openalex.org/W2209889155","https://openalex.org/W2333070830","https://openalex.org/W2949202158","https://openalex.org/W2951462323","https://openalex.org/W2953322696","https://openalex.org/W4300447302"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2105466274","https://openalex.org/W2010636594","https://openalex.org/W4283711622","https://openalex.org/W2000027971","https://openalex.org/W2091591194","https://openalex.org/W2049273629","https://openalex.org/W1993849124","https://openalex.org/W2914268038","https://openalex.org/W2061414747"],"abstract_inverted_index":{"A":[0],"compound":[1,131],"exhibits":[2],"(prototropic)":[3],"tautomerism":[4,58,121,164],"if":[5],"it":[6,50,65],"can":[7,133],"be":[8],"represented":[9],"by":[10,18,42],"two":[11],"or":[12,45],"more":[13],"structures":[14],"that":[15,81,132],"are":[16],"related":[17],"a":[19,24,48,91,111,129,135,167],"formal":[20],"intramolecular":[21],"movement":[22,36],"of":[23,37,47,57,86,90,102,113,119,161,170],"hydrogen":[25],"atom":[26,30],"from":[27],"one":[28],"heavy":[29],"position":[31],"to":[32,106,166,177],"another.":[33],"When":[34],"the":[35,38,43,84,100,117,152,159],"proton":[39],"is":[40,51,59,141],"accompanied":[41],"opening":[44],"closing":[46],"ring":[49,103],"called":[52],"ring-chain":[53,88,120,136,163,179],"tautomerism.":[54],"This":[55],"type":[56],"well":[60],"observed":[61],"in":[62,68,128,143,151,175],"carbohydrates,":[63],"but":[64],"also":[66],"occurs":[67],"other":[69],"molecules":[70],"such":[71],"as":[72],"warfarin.":[73],"In":[74],"this":[75],"work,":[76],"we":[77,108],"present":[78],"an":[79],"approach":[80],"allows":[82],"for":[83],"generation":[85],"all":[87],"tautomers":[89],"given":[92,130],"chemical":[93],"structure.":[94],"Based":[95],"on":[96,158],"Baldwin's":[97],"Rules":[98],"estimating":[99],"likelihood":[101],"closure":[104],"reactions":[105],"occur,":[107],"have":[109],"defined":[110],"set":[112],"transform":[114],"rules":[115,124,165],"covering":[116],"majority":[118],"cases.":[122],"The":[123],"automatically":[125],"detect":[126],"substructures":[127],"undergo":[134],"tautomeric":[137],"transformation.":[138],"Each":[139],"transformation":[140],"encoded":[142],"SMIRKS":[144],"line":[145],"notation.":[146],"All":[147],"work":[148],"was":[149],"implemented":[150],"chemoinformatics":[153],"toolkit":[154],"CACTVS.":[155],"We":[156],"report":[157],"application":[160],"our":[162],"large":[168],"database":[169],"commercially":[171],"available":[172],"screening":[173],"samples":[174],"order":[176],"identify":[178],"tautomers.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
