{"id":"https://openalex.org/W1966083591","doi":"https://doi.org/10.1021/ci500322k","title":"Fragment-Based Docking: Development of the CHARMMing Web User Interface as a Platform for Computer-Aided Drug Design","display_name":"Fragment-Based Docking: Development of the CHARMMing Web User Interface as a Platform for Computer-Aided Drug Design","publication_year":2014,"publication_date":"2014-08-24","ids":{"openalex":"https://openalex.org/W1966083591","doi":"https://doi.org/10.1021/ci500322k","mag":"1966083591","pmid":"https://pubmed.ncbi.nlm.nih.gov/25151852"},"language":"en","primary_location":{"id":"doi:10.1021/ci500322k","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500322k","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"publisher-specific-oa","license_id":"https://openalex.org/licenses/publisher-specific-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.osti.gov/biblio/1159173","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075227698","display_name":"Yuri Pevzner","orcid":"https://orcid.org/0000-0002-6274-8765"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuri Pevzner","raw_affiliation_strings":["Department of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032166793","display_name":"Emilie Frugier","orcid":null},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emilie Frugier","raw_affiliation_strings":["Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074277733","display_name":"Vinushka Schalk","orcid":null},"institutions":[{"id":"https://openalex.org/I4056153","display_name":"New College of Florida","ror":"https://ror.org/01cbya385","country_code":"US","type":"education","lineage":["https://openalex.org/I4056153"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vinushka Schalk","raw_affiliation_strings":["Department of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","Department of Natural Sciences, New College of Florida, Sarasota, Florida 34243, United States","Department#R#of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","Department#R#of Natural Sciences, New College of Florida, Sarasota, Florida 34243, United States"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Natural Sciences, New College of Florida, Sarasota, Florida 34243, United States","institution_ids":["https://openalex.org/I4056153"]},{"raw_affiliation_string":"Department#R#of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department#R#of Natural Sciences, New College of Florida, Sarasota, Florida 34243, United States","institution_ids":["https://openalex.org/I4056153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035048768","display_name":"Amedeo Caflisch","orcid":"https://orcid.org/0000-0002-2317-6792"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Amedeo Caflisch","raw_affiliation_strings":["Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Zurich, CH-8057 Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037901921","display_name":"H. Lee Woodcock","orcid":"https://orcid.org/0000-0003-3539-273X"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Lee Woodcock","raw_affiliation_strings":["Department of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","Department#R#of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department#R#of Chemistry, University of South Florida, 4202 E. Fowler Ave., CHE205, Tampa, Florida 33620-5250, United States","institution_ids":["https://openalex.org/I2613432"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5075227698"],"corresponding_institution_ids":["https://openalex.org/I2613432"],"apc_list":null,"apc_paid":null,"fwci":2.9246,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.90486104,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"54","issue":"9","first_page":"2612","last_page":"2620"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.7494509220123291},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7219833135604858},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6161662936210632},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.43870723247528076},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4142151176929474},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3859766125679016},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3221170902252197},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.22289004921913147},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1723509132862091},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10594755411148071}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.7494509220123291},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7219833135604858},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6161662936210632},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.43870723247528076},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4142151176929474},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3859766125679016},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3221170902252197},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.22289004921913147},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1723509132862091},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10594755411148071},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1021/ci500322k","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500322k","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":"publisher-specific-oa","license_id":"https://openalex.org/licenses/publisher-specific-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:25151852","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25151852","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:doi:10.5167/uzh-99819","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.791.7999","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.791.7999","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/63/0d/ci500322k.PMC4170817.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3515690","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4170817","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:1159173","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1159173","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:osti.gov:1159173","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1159173","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3876110867","display_name":null,"funder_award_id":"1K22HL088341-01A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4074662482","display_name":null,"funder_award_id":"CHE1156853","funder_id":"https://openalex.org/F4320337393","funder_display_name":"Division of Chemistry"},{"id":"https://openalex.org/G8276720782","display_name":null,"funder_award_id":"DE-SC0011297TDD","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337393","display_name":"Division of Chemistry","ror":"https://ror.org/01ar8dr59"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1966851289","https://openalex.org/W1970658820","https://openalex.org/W1971728215","https://openalex.org/W1985588649","https://openalex.org/W1989904188","https://openalex.org/W1997772366","https://openalex.org/W2002609131","https://openalex.org/W2002742328","https://openalex.org/W2005242486","https://openalex.org/W2009423060","https://openalex.org/W2011703027","https://openalex.org/W2015688756","https://openalex.org/W2019701333","https://openalex.org/W2021737034","https://openalex.org/W2022035926","https://openalex.org/W2023372894","https://openalex.org/W2027408247","https://openalex.org/W2029575300","https://openalex.org/W2029667189","https://openalex.org/W2031168104","https://openalex.org/W2041791898","https://openalex.org/W2044333879","https://openalex.org/W2046995485","https://openalex.org/W2050333027","https://openalex.org/W2050440510","https://openalex.org/W2052666656","https://openalex.org/W2060433756","https://openalex.org/W2061692118","https://openalex.org/W2070753604","https://openalex.org/W2071717945","https://openalex.org/W2074978477","https://openalex.org/W2078026043","https://openalex.org/W2086779432","https://openalex.org/W2090663546","https://openalex.org/W2093426296","https://openalex.org/W2100983650","https://openalex.org/W2102377211","https://openalex.org/W2111131931","https://openalex.org/W2115838194","https://openalex.org/W2129086883","https://openalex.org/W2132262459","https://openalex.org/W2133773344","https://openalex.org/W2138473864","https://openalex.org/W2139614856","https://openalex.org/W2139954389","https://openalex.org/W2142708089","https://openalex.org/W2147421370","https://openalex.org/W2147993766","https://openalex.org/W2156053468","https://openalex.org/W2162166182","https://openalex.org/W2163551694","https://openalex.org/W2169678694","https://openalex.org/W2171234651","https://openalex.org/W4244950166"],"related_works":["https://openalex.org/W1608278265","https://openalex.org/W2097677915","https://openalex.org/W2278313610","https://openalex.org/W1649706580","https://openalex.org/W1186135329","https://openalex.org/W3195608031","https://openalex.org/W1498430983","https://openalex.org/W2047602962","https://openalex.org/W2154641962","https://openalex.org/W2186453640"],"abstract_inverted_index":{"Web-based":[0],"user":[1],"interfaces":[2],"to":[3,12,38,73,82,125,141],"scientific":[4],"applications":[5],"are":[6],"important":[7],"tools":[8],"that":[9,79,135],"allow":[10],"researchers":[11],"utilize":[13],"a":[14,26,75,118],"broad":[15],"range":[16],"of":[17,120,131,151],"software":[18,45,145],"packages":[19,146],"with":[20,122],"just":[21],"an":[22],"Internet":[23],"connection":[24],"and":[25,34,41,59,86,147,160],"browser.":[27],"One":[28],"such":[29,51],"interface,":[30],"CHARMMing":[31,48,94],"(CHARMM":[32],"interface":[33],"graphics),":[35],"facilitates":[36],"access":[37],"the":[39,93,102,108,149,152],"powerful":[40],"widely":[42,143],"used":[43,63,144],"molecular":[44,53,84],"package":[46],"CHARMM.":[47],"incorporates":[49],"tasks":[50],"as":[52],"structure":[54],"analysis,":[55],"dynamics,":[56],"multiscale":[57],"modeling,":[58],"other":[60],"techniques":[61],"commonly":[62],"by":[64,116],"computational":[65],"life":[66],"scientists.":[67],"We":[68],"have":[69],"extended":[70],"CHARMMing's":[71,136],"capabilities":[72],"include":[74],"fragment-based":[76],"docking":[77,85,112,128,137,159],"protocol":[78,113],"allows":[80],"users":[81],"perform":[83],"virtual":[87,161],"screening":[88],"calculations":[89],"either":[90],"directly":[91],"via":[92,107],"Web":[95,109],"server":[96],"or":[97],"on":[98],"computing":[99],"resources":[100],"using":[101],"self-contained":[103],"job":[104],"scripts":[105],"generated":[106],"interface.":[110],"The":[111],"was":[114],"evaluated":[115],"performing":[117],"series":[119],"\"re-dockings\"":[121],"direct":[123],"comparison":[124],"top":[126],"commercial":[127],"software.":[129],"Results":[130],"this":[132],"evaluation":[133],"showed":[134],"implementation":[138],"is":[139],"comparable":[140],"many":[142],"validates":[148],"use":[150],"new":[153],"CHARMM":[154],"generalized":[155],"force":[156],"field":[157],"for":[158],"screening.":[162]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
