{"id":"https://openalex.org/W1969017960","doi":"https://doi.org/10.1021/ci500080q","title":"Comparative Assessment of Scoring Functions on an Updated Benchmark: 1. Compilation of the Test Set","display_name":"Comparative Assessment of Scoring Functions on an Updated Benchmark: 1. Compilation of the Test Set","publication_year":2014,"publication_date":"2014-04-09","ids":{"openalex":"https://openalex.org/W1969017960","doi":"https://doi.org/10.1021/ci500080q","mag":"1969017960","pmid":"https://pubmed.ncbi.nlm.nih.gov/24716849"},"language":"en","primary_location":{"id":"doi:10.1021/ci500080q","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500080q","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100726873","display_name":"Yan Li","orcid":"https://orcid.org/0000-0002-1660-0911"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Li","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences , 345 Lingling Road, Shanghai 200032 People's Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]},{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences , 345 Lingling Road, Shanghai 200032 People's Republic of China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100753007","display_name":"Zhihai Liu","orcid":"https://orcid.org/0000-0002-4527-8829"},"institutions":[{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihai Liu","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062642598","display_name":"Jie Li","orcid":"https://orcid.org/0000-0001-6511-4090"},"institutions":[{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Li","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100613345","display_name":"Li Han","orcid":"https://orcid.org/0000-0002-3654-171X"},"institutions":[{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Han","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454111","display_name":"Jie Liu","orcid":"https://orcid.org/0000-0002-4828-3244"},"institutions":[{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Liu","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042288612","display_name":"Zhixiong Zhao","orcid":"https://orcid.org/0000-0002-1876-1284"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixiong Zhao","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016374232","display_name":"Renxiao Wang","orcid":"https://orcid.org/0000-0003-0485-0259"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210112946","display_name":"Shanghai Institute of Organic Chemistry","ror":"https://ror.org/01y3hvq34","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112946"]},{"id":"https://openalex.org/I111950717","display_name":"Macau University of Science and Technology","ror":"https://ror.org/03jqs2n27","country_code":"MO","type":"education","lineage":["https://openalex.org/I111950717","https://openalex.org/I4391767947"]}],"countries":["CN","MO"],"is_corresponding":false,"raw_author_name":"Renxiao Wang","raw_affiliation_strings":["State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Bioorganic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, People\u2019s Republic of China","institution_ids":["https://openalex.org/I4210112946","https://openalex.org/I19820366"]},{"raw_affiliation_string":"State Key Laboratory of Quality Research in Chinese Medicine, Macau Institute for Applied Research in Medicine and Health, Macau University of Science and Technology, Macau, People\u2019s Republic of China","institution_ids":["https://openalex.org/I111950717"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100726873"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210112946"],"apc_list":null,"apc_paid":null,"fwci":19.566,"has_fulltext":false,"cited_by_count":229,"citation_normalized_percentile":{"value":0.99582062,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"54","issue":"6","first_page":"1700","last_page":"1716"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9678000211715698,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9678000211715698,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7743103504180908},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6162276864051819},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5472903847694397},{"id":"https://openalex.org/keywords/test","display_name":"Test (biology)","score":0.5311103463172913},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.45466747879981995},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.42492881417274475},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3633366525173187},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.358337938785553},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3480837941169739},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12980467081069946},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10261082649230957},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09921267628669739},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.07937115430831909}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7743103504180908},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6162276864051819},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5472903847694397},{"id":"https://openalex.org/C2777267654","wikidata":"https://www.wikidata.org/wiki/Q3519023","display_name":"Test (biology)","level":2,"score":0.5311103463172913},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.45466747879981995},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.42492881417274475},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3633366525173187},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.358337938785553},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3480837941169739},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12980467081069946},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10261082649230957},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09921267628669739},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.07937115430831909},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci500080q","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci500080q","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:24716849","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24716849","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W1567411871","https://openalex.org/W1972148009","https://openalex.org/W1983194490","https://openalex.org/W1983803895","https://openalex.org/W1985953075","https://openalex.org/W1986240377","https://openalex.org/W1993046136","https://openalex.org/W1993403967","https://openalex.org/W1994250273","https://openalex.org/W1998000033","https://openalex.org/W2004360551","https://openalex.org/W2008005113","https://openalex.org/W2008312146","https://openalex.org/W2009095974","https://openalex.org/W2013083986","https://openalex.org/W2013085020","https://openalex.org/W2020429677","https://openalex.org/W2023507136","https://openalex.org/W2028609644","https://openalex.org/W2030841140","https://openalex.org/W2032456809","https://openalex.org/W2035292911","https://openalex.org/W2040496005","https://openalex.org/W2041767096","https://openalex.org/W2043604722","https://openalex.org/W2050273205","https://openalex.org/W2055410316","https://openalex.org/W2061800084","https://openalex.org/W2065009334","https://openalex.org/W2067455153","https://openalex.org/W2067732724","https://openalex.org/W2068017935","https://openalex.org/W2071557543","https://openalex.org/W2076779488","https://openalex.org/W2077392616","https://openalex.org/W2077556050","https://openalex.org/W2081678229","https://openalex.org/W2086070714","https://openalex.org/W2091379422","https://openalex.org/W2092285329","https://openalex.org/W2093426296","https://openalex.org/W2095501702","https://openalex.org/W2097606916","https://openalex.org/W2107506448","https://openalex.org/W2111008899","https://openalex.org/W2112101018","https://openalex.org/W2115256962","https://openalex.org/W2121895929","https://openalex.org/W2127073449","https://openalex.org/W2127668771","https://openalex.org/W2130479394","https://openalex.org/W2132094707","https://openalex.org/W2133773344","https://openalex.org/W2137052779","https://openalex.org/W2145682943","https://openalex.org/W2146465875","https://openalex.org/W2151942123","https://openalex.org/W2167041509","https://openalex.org/W2168941972","https://openalex.org/W2171026144","https://openalex.org/W2213601517","https://openalex.org/W2241047555","https://openalex.org/W2329862012","https://openalex.org/W2949504121","https://openalex.org/W4248107770","https://openalex.org/W4320065062"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W3114272811","https://openalex.org/W2594414941","https://openalex.org/W4387327236","https://openalex.org/W2183488467","https://openalex.org/W1990237101","https://openalex.org/W4309907966","https://openalex.org/W4387896287","https://openalex.org/W2187490799","https://openalex.org/W3170838353"],"abstract_inverted_index":{"Scoring":[0],"functions":[1,38,77,100],"are":[2,205,213,229],"often":[3],"applied":[4],"in":[5,62,119,154,184,242,246],"combination":[6],"with":[7,187],"molecular":[8],"docking":[9],"methods":[10,64],"to":[11,21,41,48,81,165],"predict":[12],"ligand":[13,17,203],"binding":[14,18,144,188,221],"poses":[15],"and":[16,207,223,232],"affinities":[19],"or":[20,215],"identify":[22],"active":[23],"compounds":[24],"through":[25,125],"virtual":[26],"screening.":[27],"An":[28],"objective":[29],"benchmark":[30,87],"for":[31,45,65],"assessing":[32],"the":[33,46,59,120,136,173,202,210,235],"performance":[34],"of":[35,71,75,88,105,114,138,180,194,201,209,227,234],"current":[36,63],"scoring":[37,76,99,236],"is":[39,80],"expected":[40],"provide":[42,82],"practical":[43],"guidance":[44],"users":[47],"make":[49],"smart":[50],"choices":[51],"among":[52],"available":[53],"methods.":[54],"It":[55],"can":[56],"also":[57],"elucidate":[58],"common":[60],"weakness":[61],"future":[66],"improvements.":[67],"The":[68,169],"primary":[69],"goal":[70],"our":[72],"comparative":[73],"assessment":[74],"(CASF)":[78],"project":[79],"a":[83,126,243],"high-standard,":[84],"publicly":[85],"accessible":[86],"this":[89,197,247],"type.":[90],"Our":[91],"latest":[92],"study,":[93],"i.e.,":[94],"CASF-2013,":[95],"evaluated":[96],"20":[97],"popular":[98],"on":[101],"an":[102],"updated":[103],"set":[104,110,176],"protein-ligand":[106,116,182],"complexes.":[107],"This":[108],"data":[109,198],"was":[111,132],"selected":[112],"out":[113],"8302":[115],"complexes":[117,148,159,183],"recorded":[118],"PDBbind":[121,174],"database":[122],"(version":[123,177],"2013)":[124],"fairly":[127],"complicated":[128],"process.":[129],"Sample":[130],"selection":[131],"made":[133],"by":[134,151],"considering":[135],"quality":[137],"complex":[139],"structures":[140],"as":[141,143],"well":[142],"data.":[145],"Finally,":[146],"qualified":[147],"were":[149,160],"clustered":[150],"90%":[152],"similarity":[153],"protein":[155,211],"sequences.":[156],"Three":[157],"representative":[158],"chosen":[161],"from":[162],"each":[163],"cluster":[164],"control":[166],"sample":[167],"redundancy.":[168],"final":[170],"outcome,":[171],"namely,":[172],"core":[175],"2013),":[178],"consists":[179],"195":[181],"65":[185],"clusters":[186],"constants":[189,222],"spanning":[190],"nearly":[191],"10":[192],"orders":[193],"magnitude.":[195],"In":[196],"set,":[199],"82%":[200],"molecules":[204,212],"\"druglike\"":[206],"78%":[208],"validated":[214],"potential":[216],"drug":[217],"targets.":[218],"Correlation":[219],"between":[220],"several":[224],"key":[225],"properties":[226],"ligands":[228],"discussed.":[230],"Methods":[231],"results":[233],"function":[237],"evaluation":[238],"will":[239],"be":[240],"described":[241],"companion":[244],"work":[245],"issue":[248],"(doi:":[249],"10.1021/ci500081m":[250],").":[251]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":34},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":22},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":5}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
