{"id":"https://openalex.org/W2023630889","doi":"https://doi.org/10.1021/ci400107k","title":"Searching for Recursively Defined Generic Chemical Patterns in Nonenumerated Fragment Spaces","display_name":"Searching for Recursively Defined Generic Chemical Patterns in Nonenumerated Fragment Spaces","publication_year":2013,"publication_date":"2013-06-11","ids":{"openalex":"https://openalex.org/W2023630889","doi":"https://doi.org/10.1021/ci400107k","mag":"2023630889","pmid":"https://pubmed.ncbi.nlm.nih.gov/23751070"},"language":"en","primary_location":{"id":"doi:10.1021/ci400107k","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci400107k","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072560776","display_name":"Hans\u2010Christian Ehrlich","orcid":"https://orcid.org/0000-0001-5866-5433"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Hans-Christian Ehrlich","raw_affiliation_strings":["University of Hamburg, Bundestra\u00dfe\r43, 20146 Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Hamburg, Bundestra\u00dfe\r43, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024251752","display_name":"Angela M. Henzler","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Angela M. Henzler","raw_affiliation_strings":["University of Hamburg, Bundestra\u00dfe\r43, 20146 Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Hamburg, Bundestra\u00dfe\r43, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083205378","display_name":"Matthias Rarey","orcid":"https://orcid.org/0000-0002-9553-6531"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Rarey","raw_affiliation_strings":["University of Hamburg, Bundestra\u00dfe\r43, 20146 Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Hamburg, Bundestra\u00dfe\r43, 20146 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072560776"],"corresponding_institution_ids":["https://openalex.org/I159176309"],"apc_list":null,"apc_paid":null,"fwci":1.8127,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.84979845,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"53","issue":"7","first_page":"1676","last_page":"1688"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9375,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.9269999861717224,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.8673259019851685},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.509100615978241},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.25008076429367065}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.8673259019851685},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.509100615978241},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.25008076429367065}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci400107k","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci400107k","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:23751070","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23751070","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1475322720","https://openalex.org/W1563566554","https://openalex.org/W1578639442","https://openalex.org/W1910918478","https://openalex.org/W1979278760","https://openalex.org/W1979868386","https://openalex.org/W1984658665","https://openalex.org/W1990567988","https://openalex.org/W1991286793","https://openalex.org/W1999820454","https://openalex.org/W2009357736","https://openalex.org/W2012943500","https://openalex.org/W2016004960","https://openalex.org/W2017254234","https://openalex.org/W2018774810","https://openalex.org/W2021908878","https://openalex.org/W2022476850","https://openalex.org/W2026800167","https://openalex.org/W2027162181","https://openalex.org/W2030061504","https://openalex.org/W2031372687","https://openalex.org/W2038617772","https://openalex.org/W2040948463","https://openalex.org/W2051650468","https://openalex.org/W2052633277","https://openalex.org/W2052933929","https://openalex.org/W2060576972","https://openalex.org/W2073067110","https://openalex.org/W2074440087","https://openalex.org/W2075917770","https://openalex.org/W2078882389","https://openalex.org/W2102913801","https://openalex.org/W2104722869","https://openalex.org/W2126359798","https://openalex.org/W2129683878","https://openalex.org/W2147405597","https://openalex.org/W2153657185","https://openalex.org/W2153693853","https://openalex.org/W2161782568","https://openalex.org/W2176516200","https://openalex.org/W2205915548","https://openalex.org/W2951811035","https://openalex.org/W4210483668","https://openalex.org/W4319704957"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1973480752","https://openalex.org/W2805502594","https://openalex.org/W4253208712","https://openalex.org/W3132641048","https://openalex.org/W2217679042","https://openalex.org/W1603677234","https://openalex.org/W2525971763","https://openalex.org/W2984753899","https://openalex.org/W2783178962"],"abstract_inverted_index":{"Retrieving":[0],"molecules":[1,41,76,168,253],"with":[2,77,191],"specific":[3],"structural":[4,237],"features":[5],"is":[6,31,61,104,155,159],"a":[7,57,98,138,143,160,186],"fundamental":[8],"requirement":[9],"of":[10,34,40,55,66,95,101,130,134,153,206,225,270],"today's":[11],"molecular":[12],"database":[13],"technologies.":[14],"Estimates":[15],"claim":[16],"the":[17,38,50,64,92,121,131,148,150,171,176,204,207,211,223,241,268,271],"chemical":[18,59,116,123,132,212],"space":[19,60,71,162,213,243],"relevant":[20],"for":[21,114,222],"drug":[22,181],"discovery":[23],"to":[24,84,88,91,110,209,218,230,251],"be":[25,255],"around":[26,214],"10\u2076\u2070":[27],"molecules.":[28],"This":[29],"figure":[30],"many":[32],"orders":[33],"magnitude":[35],"larger":[36],"than":[37],"amount":[39],"conventional":[42],"databases":[43],"retain":[44],"today":[45],"and":[46,80,184,229,263],"will":[47],"store":[48],"in":[49,120,137,178,244,257],"future.":[51],"An":[52],"elegant":[53],"description":[54],"such":[56],"large":[58,187],"provided":[62],"by":[63],"concept":[65],"fragment":[67,70,96,112,161,199,220,242],"spaces.":[68,200],"A":[69],"comprises":[72],"fragments":[73,87],"that":[74,163,169],"are":[75],"open":[78],"valences":[79],"describes":[81,165],"rules":[82],"how":[83],"connect":[85],"these":[86],"products.":[89],"Due":[90],"combinatorial":[93],"nature":[94],"spaces,":[97],"complete":[99],"enumeration":[100,152],"its":[102,245],"products":[103,154],"intractable.":[105],"We":[106,174],"present":[107,119],"an":[108,135],"algorithm":[109,177,208],"search":[111],"spaces":[113,221,248],"generic":[115],"patterns":[117,194],"as":[118],"SMARTS":[122,193],"pattern":[124],"language.":[125],"Our":[126,201],"method":[127],"allows":[128],"specification":[129],"surrounding":[133],"atom":[136],"query":[139,272],"and,":[140],"therefore,":[141],"enables":[142],"chemically":[144],"intuitive":[145],"search.":[146],"During":[147],"search,":[149],"costly":[151],"avoided.":[156],"The":[157],"result":[158],"exactly":[164],"all":[166],"possible":[167],"contain":[170],"user-defined":[172],"pattern.":[173,273],"evaluated":[175],"three":[179,196],"different":[180],"development":[182],"use-cases":[183],"performed":[185],"scale":[188],"statistical":[189],"analysis":[190],"738":[192],"on":[195,267],"public":[197],"available":[198],"results":[202],"show":[203],"ability":[205],"explore":[210],"known":[215],"active":[216],"molecules,":[217,228],"analyze":[219],"presence":[224],"likely":[226],"toxic":[227],"identify":[231],"complex":[232],"macromolecular":[233],"structures":[234],"under":[235],"additional":[236],"constraints.":[238],"By":[239],"searching":[240],"nonenumerated":[246],"form,":[247],"covering":[249],"up":[250],"10\u00b9\u2079":[252],"can":[254],"examined":[256],"times":[258],"ranging":[259],"between":[260],"47":[261],"s":[262],"19":[264],"min":[265],"depending":[266],"complexity":[269]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
