{"id":"https://openalex.org/W2107796582","doi":"https://doi.org/10.1021/ci300194a","title":"CRDOCK: An Ultrafast Multipurpose Protein\u2013Ligand Docking Tool","display_name":"CRDOCK: An Ultrafast Multipurpose Protein\u2013Ligand Docking Tool","publication_year":2012,"publication_date":"2012-07-06","ids":{"openalex":"https://openalex.org/W2107796582","doi":"https://doi.org/10.1021/ci300194a","mag":"2107796582","pmid":"https://pubmed.ncbi.nlm.nih.gov/22764680"},"language":"en","primary_location":{"id":"doi:10.1021/ci300194a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci300194a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056460983","display_name":"\u00c1lvaro Cort\u00e9s-Cabrera","orcid":"https://orcid.org/0000-0003-4635-6267"},"institutions":[{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I189268942","display_name":"Universidad de Alcal\u00e1","ror":"https://ror.org/04pmn0e78","country_code":"ES","type":"education","lineage":["https://openalex.org/I189268942"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"\u00c1lvaro Cort\u00e9s Cabrera","raw_affiliation_strings":["Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1 de Henares, Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1\rde Henares, Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1 de Henares, Madrid, Spain","institution_ids":["https://openalex.org/I189268942"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1\rde Henares, Madrid, Spain","institution_ids":["https://openalex.org/I189268942"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079344937","display_name":"Javier Klett","orcid":"https://orcid.org/0000-0001-8495-6568"},"institutions":[{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Javier Klett","raw_affiliation_strings":["Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000462747","display_name":"Helena G. Dos Santos","orcid":"https://orcid.org/0000-0002-9671-4272"},"institutions":[{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Helena G. Dos Santos","raw_affiliation_strings":["Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056706298","display_name":"Almudena Perona","orcid":"https://orcid.org/0000-0002-2402-4926"},"institutions":[{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]},{"id":"https://openalex.org/I2802543619","display_name":"IMDEA Nanoscience","ror":"https://ror.org/02skytd81","country_code":"ES","type":"facility","lineage":["https://openalex.org/I105140100","https://openalex.org/I2802543619"]},{"id":"https://openalex.org/I4210112467","display_name":"Fundaci\u00f3n A LA PAR","ror":"https://ror.org/01dxbn742","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210112467"]},{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Almudena Perona","raw_affiliation_strings":["SmartLigs Bioinform\u00e1tica S.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","SmartLigs Bioinform\u00e1tica\rS.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"SmartLigs Bioinform\u00e1tica S.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I2802543619","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"SmartLigs Bioinform\u00e1tica\rS.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210112467","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055887437","display_name":"Rub\u00e9n Gil\u2010Redondo","orcid":"https://orcid.org/0000-0002-3541-9085"},"institutions":[{"id":"https://openalex.org/I4210112467","display_name":"Fundaci\u00f3n A LA PAR","ror":"https://ror.org/01dxbn742","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210112467"]},{"id":"https://openalex.org/I2802543619","display_name":"IMDEA Nanoscience","ror":"https://ror.org/02skytd81","country_code":"ES","type":"facility","lineage":["https://openalex.org/I105140100","https://openalex.org/I2802543619"]},{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rub\u00e9n Gil-Redondo","raw_affiliation_strings":["SmartLigs Bioinform\u00e1tica S.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","SmartLigs Bioinform\u00e1tica\rS.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"SmartLigs Bioinform\u00e1tica S.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I2802543619","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"SmartLigs Bioinform\u00e1tica\rS.L., Fundaci\u00f3n Parque Cient\u00edfico de Madrid, c/Faraday 7, Campus de Cantoblanco UAM, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210112467","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057870220","display_name":"Sandrea M. Francis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148788","display_name":"Instituto de Biomedicina de Valencia","ror":"https://ror.org/05pq8vh42","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210148788"]},{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"funder","lineage":["https://openalex.org/I134820265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sandrea M. Francis","raw_affiliation_strings":["Instituto de Biomedicina de Valencia (IBV-CSIC), c/Jaime Roig 11, E-46010 Valencia, Spain","Instituto de Biomedicina de Valencia (IBV-CSIC), c/Jaime Roig 11, E-46010 Valencia,#R#Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Biomedicina de Valencia (IBV-CSIC), c/Jaime Roig 11, E-46010 Valencia, Spain","institution_ids":["https://openalex.org/I4210148788"]},{"raw_affiliation_string":"Instituto de Biomedicina de Valencia (IBV-CSIC), c/Jaime Roig 11, E-46010 Valencia,#R#Spain","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019957189","display_name":"Eva\u2010Mar\u00eda Priego","orcid":"https://orcid.org/0000-0001-9470-4508"},"institutions":[{"id":"https://openalex.org/I4210121842","display_name":"Instituto de Qu\u00edmica M\u00e9dica","ror":"https://ror.org/02vznxv75","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210121842"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Eva M. Priego","raw_affiliation_strings":["Instituto de Qu\u00edmica M\u00e9dica (CSIC), c/Juan de la Cierva 3, E-28006 Madrid, Spain","Instituto de Qu\u00edmica M\u00e9dica (CSIC), c/Juan de la Cierva 3, E-28006\rMadrid, Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Qu\u00edmica M\u00e9dica (CSIC), c/Juan de la Cierva 3, E-28006 Madrid, Spain","institution_ids":["https://openalex.org/I4210121842"]},{"raw_affiliation_string":"Instituto de Qu\u00edmica M\u00e9dica (CSIC), c/Juan de la Cierva 3, E-28006\rMadrid, Spain","institution_ids":["https://openalex.org/I4210121842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048905988","display_name":"Federico Gago","orcid":"https://orcid.org/0000-0002-3071-4878"},"institutions":[{"id":"https://openalex.org/I189268942","display_name":"Universidad de Alcal\u00e1","ror":"https://ror.org/04pmn0e78","country_code":"ES","type":"education","lineage":["https://openalex.org/I189268942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Federico Gago","raw_affiliation_strings":["Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1 de Henares, Madrid, Spain","Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1\rde Henares, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1 de Henares, Madrid, Spain","institution_ids":["https://openalex.org/I189268942"]},{"raw_affiliation_string":"Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, E-28871 Alcal\u00e1\rde Henares, Madrid, Spain","institution_ids":["https://openalex.org/I189268942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023692978","display_name":"Antonio Morreale","orcid":"https://orcid.org/0000-0003-4236-0883"},"institutions":[{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Morreale","raw_affiliation_strings":["Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s\rCabrera 1, E-28049 Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5056460983"],"corresponding_institution_ids":["https://openalex.org/I189268942","https://openalex.org/I4210146061","https://openalex.org/I63634437"],"apc_list":null,"apc_paid":null,"fwci":2.7894,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.91012873,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"52","issue":"8","first_page":"2300","last_page":"2309"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8099656701087952},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6702702641487122},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5995256900787354},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.563976526260376},{"id":"https://openalex.org/keywords/modularity","display_name":"Modularity (biology)","score":0.5436796545982361},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.4991319179534912},{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.4691687226295471},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3706846833229065},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26099658012390137}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8099656701087952},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6702702641487122},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5995256900787354},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.563976526260376},{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.5436796545982361},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.4991319179534912},{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.4691687226295471},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3706846833229065},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26099658012390137},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1021/ci300194a","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci300194a","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:22764680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22764680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/112263","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/112263","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1605578858","https://openalex.org/W1637084285","https://openalex.org/W1850609236","https://openalex.org/W1970658820","https://openalex.org/W1973191530","https://openalex.org/W1983194490","https://openalex.org/W1985588649","https://openalex.org/W1988744515","https://openalex.org/W1990192293","https://openalex.org/W2001191780","https://openalex.org/W2001674138","https://openalex.org/W2007560426","https://openalex.org/W2009423060","https://openalex.org/W2011805684","https://openalex.org/W2013090273","https://openalex.org/W2014276094","https://openalex.org/W2015290017","https://openalex.org/W2018989832","https://openalex.org/W2021720722","https://openalex.org/W2032159017","https://openalex.org/W2038772855","https://openalex.org/W2042126044","https://openalex.org/W2043209972","https://openalex.org/W2052031557","https://openalex.org/W2054338762","https://openalex.org/W2058835307","https://openalex.org/W2060284524","https://openalex.org/W2064572456","https://openalex.org/W2067455153","https://openalex.org/W2068672372","https://openalex.org/W2071957747","https://openalex.org/W2076481851","https://openalex.org/W2078959398","https://openalex.org/W2080653934","https://openalex.org/W2085739597","https://openalex.org/W2089447985","https://openalex.org/W2093426296","https://openalex.org/W2105372393","https://openalex.org/W2120551199","https://openalex.org/W2127760066","https://openalex.org/W2135817448","https://openalex.org/W2137052779","https://openalex.org/W2160037672","https://openalex.org/W2160205549","https://openalex.org/W2165565773","https://openalex.org/W2167901867","https://openalex.org/W2171074980","https://openalex.org/W2172216479","https://openalex.org/W2176516200","https://openalex.org/W2259055855","https://openalex.org/W4253191544"],"related_works":["https://openalex.org/W1581147483","https://openalex.org/W4310018788","https://openalex.org/W2417162538","https://openalex.org/W1567411871","https://openalex.org/W2329052364","https://openalex.org/W2162967120","https://openalex.org/W2336040088","https://openalex.org/W2027065525","https://openalex.org/W2773493604","https://openalex.org/W2269591907"],"abstract_inverted_index":{"An":[0],"ultrafast":[1],"docking":[2],"and":[3,24,41,92,107,154],"virtual":[4],"screening":[5],"program,":[6],"CRDOCK,":[7],"is":[8,161],"presented":[9],"that":[10,16,55,73,136],"contains":[11],"(1)":[12],"a":[13,19,67,99,127],"search":[14],"engine":[15],"can":[17,56,116],"use":[18],"variety":[20],"of":[21,52,70,95,102,111,130,151],"sampling":[22],"methods":[23],"an":[25,108],"initial":[26],"energy":[27,32],"evaluation":[28],"function,":[29],"(2)":[30],"several":[31],"minimization":[33],"algorithms":[34],"for":[35,169],"fine":[36],"tuning":[37],"the":[38,49,61,88,93,149],"binding":[39],"poses,":[40],"(3)":[42],"different":[43],"scoring":[44],"functions.":[45],"This":[46],"modularity":[47],"ensures":[48],"easy":[50],"configuration":[51],"custom-made":[53],"protocols":[54],"be":[57,117],"optimized":[58],"depending":[59],"on":[60,83,119],"problem":[62],"in":[63,104,121],"hand.":[64],"CRDOCK":[65,82,160],"employs":[66],"precomputed":[68],"library":[69],"ligand":[71,115],"conformations":[72],"are":[74],"initially":[75],"generated":[76],"from":[77],"one-dimensional":[78],"SMILES":[79],"strings.":[80],"Testing":[81],"two":[84],"widely":[85],"used":[86],"benchmarks,":[87],"ASTEX":[89],"diverse":[90],"set":[91],"Directory":[94],"Useful":[96],"Decoys,":[97],"yielded":[98],"success":[100],"rate":[101],"~75%":[103],"pose":[105],"prediction":[106],"average":[109],"AUC":[110],"0.66.":[112],"A":[113],"typical":[114],"docked,":[118],"average,":[120],"just":[122],"~13":[123],"s.":[124],"Extension":[125],"to":[126,147],"representative":[128],"group":[129],"pharmacologically":[131],"relevant":[132],"G":[133],"protein-coupled":[134],"receptors":[135],"have":[137],"been":[138],"recently":[139],"cocrystallized":[140],"with":[141],"some":[142,157],"selective":[143],"ligands":[144],"allowed":[145],"us":[146],"demonstrate":[148],"utility":[150],"this":[152],"tool":[153],"also":[155],"highlight":[156],"current":[158],"limitations.":[159],"now":[162],"included":[163],"within":[164],"VSDMIP,":[165],"our":[166],"integrated":[167],"platform":[168],"drug":[170],"discovery.":[171]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
