{"id":"https://openalex.org/W1982459281","doi":"https://doi.org/10.1021/ci300072q","title":"A Strategy Based on Protein\u2013Protein Interface Motifs May Help in Identifying Drug Off-Targets","display_name":"A Strategy Based on Protein\u2013Protein Interface Motifs May Help in Identifying Drug Off-Targets","publication_year":2012,"publication_date":"2012-07-20","ids":{"openalex":"https://openalex.org/W1982459281","doi":"https://doi.org/10.1021/ci300072q","mag":"1982459281","pmid":"https://pubmed.ncbi.nlm.nih.gov/22817115"},"language":"en","primary_location":{"id":"doi:10.1021/ci300072q","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci300072q","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055754716","display_name":"H. Billur Engin","orcid":null},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"H. Billur Engin","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Rumelifeneri Yolu, 34450 Sariyer, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Rumelifeneri Yolu, 34450 Sariyer, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057115991","display_name":"\u00d6zlem Keskin","orcid":"https://orcid.org/0000-0002-4202-4049"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ozlem Keskin","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Rumelifeneri Yolu, 34450 Sariyer, Istanbul, Turkey","Center for#R#Computational Biology#R#and Bioinformatics and College of Engineering, Koc University, Rumelifeneri#R#Yolu, 34450 Sariyer, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Rumelifeneri Yolu, 34450 Sariyer, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]},{"raw_affiliation_string":"Center for#R#Computational Biology#R#and Bioinformatics and College of Engineering, Koc University, Rumelifeneri#R#Yolu, 34450 Sariyer, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025357844","display_name":"Ruth Nussinov","orcid":"https://orcid.org/0000-0002-8115-6415"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"id":"https://openalex.org/I880747138","display_name":"Science Applications International Corporation (United States)","ror":"https://ror.org/00zv91802","country_code":"US","type":"company","lineage":["https://openalex.org/I880747138"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Ruth Nussinov","raw_affiliation_strings":["Center for Cancer Research Nanobiology Program, Frederick National Laboratory for Cancer Research, SAIC-Frederick, Maryland 21702, United States","Sackler Inst. of Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","Sackler Inst. of Molecular Medicine,#R#Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","Center for Cancer Research Nanobiology#R#Program, Frederick National Laboratory for Cancer Research, SAIC-Frederick,#R#Maryland 21702, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cancer Research Nanobiology Program, Frederick National Laboratory for Cancer Research, SAIC-Frederick, Maryland 21702, United States","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210149717"]},{"raw_affiliation_string":"Sackler Inst. of Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Sackler Inst. of Molecular Medicine,#R#Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Center for Cancer Research Nanobiology#R#Program, Frederick National Laboratory for Cancer Research, SAIC-Frederick,#R#Maryland 21702, United States","institution_ids":["https://openalex.org/I880747138"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036278069","display_name":"Attila G\u00fcrsoy","orcid":"https://orcid.org/0000-0002-2297-2113"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Attila Gursoy","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Rumelifeneri Yolu, 34450 Sariyer, Istanbul, Turkey","Center for#R#Computational Biology#R#and Bioinformatics and College of Engineering, Koc University, Rumelifeneri#R#Yolu, 34450 Sariyer, Istanbul, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, Rumelifeneri Yolu, 34450 Sariyer, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]},{"raw_affiliation_string":"Center for#R#Computational Biology#R#and Bioinformatics and College of Engineering, Koc University, Rumelifeneri#R#Yolu, 34450 Sariyer, Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5036278069"],"corresponding_institution_ids":["https://openalex.org/I1351752"],"apc_list":null,"apc_paid":null,"fwci":4.8593,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.95200524,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"52","issue":"8","first_page":"2273","last_page":"2286"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5744730830192566},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5643688440322876},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5450021624565125},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5304262638092041},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.501873254776001},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.42548587918281555},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30081579089164734},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2772912085056305},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20012226700782776},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.13163113594055176},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12706106901168823}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5744730830192566},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5643688440322876},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5450021624565125},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5304262638092041},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.501873254776001},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.42548587918281555},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30081579089164734},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2772912085056305},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20012226700782776},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.13163113594055176},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12706106901168823},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058990","descriptor_name":"Molecular Targeted Therapy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1021/ci300072q","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci300072q","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:22817115","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22817115","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.703.7933","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.703.7933","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://home.ku.edu.tr/%7Eokeskin/Engin_OffTarget.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2961579","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3979525","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2571622504","display_name":null,"funder_award_id":"ZIA BC010441","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5888954722","display_name":null,"funder_award_id":"HHSN261200800001C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6032214852","display_name":null,"funder_award_id":"HHSN261200800001E","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":104,"referenced_works":["https://openalex.org/W80748578","https://openalex.org/W1525531613","https://openalex.org/W1601495365","https://openalex.org/W1622452956","https://openalex.org/W1650797637","https://openalex.org/W1966935234","https://openalex.org/W1967385589","https://openalex.org/W1969327849","https://openalex.org/W1970779989","https://openalex.org/W1971213794","https://openalex.org/W1979414133","https://openalex.org/W1983091676","https://openalex.org/W1988152696","https://openalex.org/W1990495809","https://openalex.org/W1999895438","https://openalex.org/W2001565801","https://openalex.org/W2001709898","https://openalex.org/W2002202959","https://openalex.org/W2003402631","https://openalex.org/W2005885406","https://openalex.org/W2008620264","https://openalex.org/W2008887283","https://openalex.org/W2009313526","https://openalex.org/W2010485601","https://openalex.org/W2018408116","https://openalex.org/W2018664033","https://openalex.org/W2019951137","https://openalex.org/W2023170820","https://openalex.org/W2024908724","https://openalex.org/W2029667189","https://openalex.org/W2033591223","https://openalex.org/W2034269086","https://openalex.org/W2034537627","https://openalex.org/W2038555943","https://openalex.org/W2042392223","https://openalex.org/W2050445943","https://openalex.org/W2054118816","https://openalex.org/W2055812500","https://openalex.org/W2056169996","https://openalex.org/W2057545775","https://openalex.org/W2058338966","https://openalex.org/W2060464767","https://openalex.org/W2065769502","https://openalex.org/W2070040136","https://openalex.org/W2074192927","https://openalex.org/W2087574732","https://openalex.org/W2090183113","https://openalex.org/W2091563009","https://openalex.org/W2091710329","https://openalex.org/W2096766502","https://openalex.org/W2096942809","https://openalex.org/W2103616303","https://openalex.org/W2104916446","https://openalex.org/W2105668062","https://openalex.org/W2106278308","https://openalex.org/W2108069034","https://openalex.org/W2112109058","https://openalex.org/W2112651905","https://openalex.org/W2114779636","https://openalex.org/W2115451817","https://openalex.org/W2116096636","https://openalex.org/W2116296021","https://openalex.org/W2120850582","https://openalex.org/W2125200271","https://openalex.org/W2125211913","https://openalex.org/W2128402268","https://openalex.org/W2129297473","https://openalex.org/W2130253098","https://openalex.org/W2130479394","https://openalex.org/W2130790725","https://openalex.org/W2133990057","https://openalex.org/W2135924325","https://openalex.org/W2138024326","https://openalex.org/W2139516171","https://openalex.org/W2141624700","https://openalex.org/W2142912491","https://openalex.org/W2146538795","https://openalex.org/W2150066952","https://openalex.org/W2152444476","https://openalex.org/W2153838454","https://openalex.org/W2154139219","https://openalex.org/W2154626333","https://openalex.org/W2154896031","https://openalex.org/W2154937472","https://openalex.org/W2155142785","https://openalex.org/W2158080359","https://openalex.org/W2161378573","https://openalex.org/W2162011385","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2164298117","https://openalex.org/W2164391585","https://openalex.org/W2165125496","https://openalex.org/W2165232124","https://openalex.org/W2167398093","https://openalex.org/W2167867998","https://openalex.org/W2916767477","https://openalex.org/W2917375902","https://openalex.org/W3103071483","https://openalex.org/W4210483668","https://openalex.org/W4230036310","https://openalex.org/W4234326582","https://openalex.org/W4312512934","https://openalex.org/W4376453232"],"related_works":["https://openalex.org/W2553548503","https://openalex.org/W3045995536","https://openalex.org/W4390443207","https://openalex.org/W1967404732","https://openalex.org/W2226749982","https://openalex.org/W1968386238","https://openalex.org/W4308253407","https://openalex.org/W4353017618","https://openalex.org/W4310831746","https://openalex.org/W3206915023"],"abstract_inverted_index":{"Networks":[0],"are":[1,192],"increasingly":[2],"used":[3],"to":[4,61,69,143],"study":[5],"the":[6,11,15,78,116,145,151,154,176,199,210,214,220,230,239],"impact":[7],"of":[8,25,67,84,118,172,216],"drugs":[9,228],"at":[10],"systems":[12],"level.":[13],"From":[14],"algorithmic":[16],"standpoint,":[17],"a":[18,26,35,57,64,102],"drug":[19,58],"can":[20,49],"\"attack\"":[21],"nodes":[22],"or":[23],"edges":[24,173],"protein-protein":[27,44,119],"interaction":[28,124,240],"network.":[29],"In":[30,219],"this":[31],"work,":[32],"we":[33,106,225],"propose":[34],"new":[36],"network":[37,79,93,103,128,157,160],"strategy,":[38],"\"The":[39],"Interface":[40,109],"Attack\",":[41],"based":[42],"on":[43],"interfaces.":[45],"Similar":[46],"interface":[47,72,86,120,203,231],"architectures":[48],"occur":[50],"between":[51,232,241],"unrelated":[52],"proteins.":[53,218],"Consequently,":[54],"in":[55,198,209],"principle,":[56],"that":[59,82,105,165,227],"binds":[60],"one":[62],"has":[63],"certain":[65],"probability":[66],"binding":[68],"others.":[70],"The":[71],"attack":[73,204,215],"strategy":[74,89],"simultaneously":[75],"removes":[76],"from":[77],"all":[80],"interactions":[81],"consist":[83],"similar":[85,136],"motifs.":[87],"This":[88,126],"is":[90,115],"inspired":[91],"by":[92],"pharmacology":[94],"and":[95,110,122,138,158,201,234,243],"allows":[96],"inferring":[97],"potential":[98],"off-targets.":[99],"We":[100,149,163],"introduce":[101],"model":[104],"call":[107],"\"Protein":[108],"Interaction":[111],"Network":[112],"(P2IN)\",":[113],"which":[114,131,139],"integration":[117],"structures":[121],"protein":[123,132],"networks.":[125],"interface-based":[127],"organization":[129],"clarifies":[130],"pairs":[133],"have":[134],"structurally":[135],"interfaces":[137,169,191],"proteins":[140,186],"may":[141,205,236],"compete":[142],"bind":[144],"same":[146],"surface":[147],"region.":[148],"built":[150],"P2IN":[152],"with":[153],"p53":[155],"signaling":[156],"performed":[159],"robustness":[161],"analysis.":[162],"show":[164],"(1)":[166],"\"hitting\"":[167],"frequent":[168,190],"(a":[170],"set":[171],"distributed":[174],"around":[175],"network)":[177],"might":[178],"be":[179],"as":[180,182],"destructive":[181],"eleminating":[183],"high":[184],"degree":[185],"(hub":[187],"nodes),":[188],"(2)":[189],"not":[193],"always":[194],"topologically":[195],"critical":[196],"elements":[197],"network,":[200],"(3)":[202],"reveal":[206],"functional":[207],"changes":[208],"system":[211],"better":[212],"than":[213],"single":[217],"off-target":[221],"detection":[222],"case":[223],"study,":[224],"found":[226],"blocking":[229],"CDK6":[233],"CDKN2D":[235],"also":[237],"affect":[238],"CDK4":[242],"CDKN2D.":[244]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
