{"id":"https://openalex.org/W2048347251","doi":"https://doi.org/10.1021/ci3000419","title":"New Benchmark for Chemical Nomenclature Software","display_name":"New Benchmark for Chemical Nomenclature Software","publication_year":2012,"publication_date":"2012-04-08","ids":{"openalex":"https://openalex.org/W2048347251","doi":"https://doi.org/10.1021/ci3000419","mag":"2048347251","pmid":"https://pubmed.ncbi.nlm.nih.gov/22482697"},"language":"en","primary_location":{"id":"doi:10.1021/ci3000419","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci3000419","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064863846","display_name":"Edward O. Cannon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210158493","display_name":"Open Source Science Project","ror":"https://ror.org/0523sbv14","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210158493"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Edward O. Cannon","raw_affiliation_strings":["OpenEye Scientific Software, 9 Bisbee Court Suite D, Santa Fe, New Mexico 87508, United States","OpenEye Scientific Software , 9 Bisbee Court, Suite D, Santa Fe, New Mexico 87508, United States"],"affiliations":[{"raw_affiliation_string":"OpenEye Scientific Software, 9 Bisbee Court Suite D, Santa Fe, New Mexico 87508, United States","institution_ids":["https://openalex.org/I4210158493"]},{"raw_affiliation_string":"OpenEye Scientific Software , 9 Bisbee Court, Suite D, Santa Fe, New Mexico 87508, United States","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5064863846"],"corresponding_institution_ids":["https://openalex.org/I4210158493"],"apc_list":null,"apc_paid":null,"fwci":0.394,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.61137088,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"52","issue":"5","first_page":"1124","last_page":"1131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nomenclature","display_name":"Nomenclature","score":0.8822313547134399},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7787694334983826},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5600235462188721},{"id":"https://openalex.org/keywords/tripping","display_name":"Tripping","score":0.5501679182052612},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4947933554649353},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3351508378982544},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12750613689422607},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12204977869987488},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10441941022872925},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.07424211502075195},{"id":"https://openalex.org/keywords/zoology","display_name":"Zoology","score":0.07149553298950195},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.06055203080177307}],"concepts":[{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.8822313547134399},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7787694334983826},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5600235462188721},{"id":"https://openalex.org/C2779733308","wikidata":"https://www.wikidata.org/wiki/Q17146464","display_name":"Tripping","level":3,"score":0.5501679182052612},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4947933554649353},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3351508378982544},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12750613689422607},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12204977869987488},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10441941022872925},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.07424211502075195},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.07149553298950195},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.06055203080177307},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C61352017","wikidata":"https://www.wikidata.org/wiki/Q211058","display_name":"Circuit breaker","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1021/ci3000419","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci3000419","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:22482697","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22482697","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308380","display_name":"Yale University","ror":"https://ror.org/03v76x132"},{"id":"https://openalex.org/F4320327402","display_name":"Shanghai International Studies University","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1492067237","https://openalex.org/W1493349649","https://openalex.org/W1494397238","https://openalex.org/W1580679283","https://openalex.org/W1975147762","https://openalex.org/W2012415002","https://openalex.org/W2034354062","https://openalex.org/W2047600440","https://openalex.org/W2051810242","https://openalex.org/W2056823697","https://openalex.org/W2085262786","https://openalex.org/W2087728643","https://openalex.org/W2102110064","https://openalex.org/W2148797284","https://openalex.org/W2162012799","https://openalex.org/W2325049946","https://openalex.org/W2477028812","https://openalex.org/W2497748342","https://openalex.org/W2951811035","https://openalex.org/W4248107770"],"related_works":["https://openalex.org/W2576428960","https://openalex.org/W2348657577","https://openalex.org/W2371866616","https://openalex.org/W314499628","https://openalex.org/W2054734788","https://openalex.org/W4246867584","https://openalex.org/W2349315338","https://openalex.org/W2367726812","https://openalex.org/W2382268219","https://openalex.org/W2380479095"],"abstract_inverted_index":{"We":[0],"propose":[1],"a":[2,39,80],"new,":[3],"robust":[4],"benchmark,":[5],"called":[6],"Percentage":[7],"Round":[8],"Tripping":[9],"of":[10,19,62,74,82],"Canonical":[11],"Isomeric":[12],"SMILES":[13,45],"(%RTCS),":[14],"for":[15,79],"assessing":[16],"the":[17,48,52,59,63],"ability":[18],"chemical":[20,25,30,65],"nomenclature":[21,66],"software":[22],"to":[23,27,32],"convert":[24],"structures":[26],"names":[28,31],"and":[29,51],"structures.":[33],"The":[34],"benchmark":[35],"is":[36],"based":[37],"on":[38,77],"string":[40],"comparison":[41],"between":[42],"canonical":[43],"isomeric":[44],"generated":[46],"from":[47,55],"original":[49],"structure":[50,54],"resultant":[53],"round":[56],"tripping.":[57],"Using":[58],"latest":[60],"version":[61],"OpenEye":[64],"toolkit,":[67],"Lexichem":[68],"v2.1.0,":[69],"we":[70],"report":[71],"%RTCS":[72],"values":[73],"over":[75],"92%":[76],"average":[78],"variety":[81],"challenging":[83],"compound":[84],"collections.":[85]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
