{"id":"https://openalex.org/W2065014569","doi":"https://doi.org/10.1021/ci200562p","title":"Application of Support Vector Machine to Three-Dimensional Shape-Based Virtual Screening Using Comprehensive Three-Dimensional Molecular Shape Overlay with Known Inhibitors","display_name":"Application of Support Vector Machine to Three-Dimensional Shape-Based Virtual Screening Using Comprehensive Three-Dimensional Molecular Shape Overlay with Known Inhibitors","publication_year":2012,"publication_date":"2012-03-17","ids":{"openalex":"https://openalex.org/W2065014569","doi":"https://doi.org/10.1021/ci200562p","mag":"2065014569","pmid":"https://pubmed.ncbi.nlm.nih.gov/22424085"},"language":"en","primary_location":{"id":"doi:10.1021/ci200562p","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci200562p","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030109331","display_name":"Tomohiro Sato","orcid":"https://orcid.org/0000-0002-0660-5559"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]},{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomohiro Sato","raw_affiliation_strings":["RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Systems and Structural Biology Center , 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center , 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240","https://openalex.org/I4210118579"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028458481","display_name":"Hitomi Yuki","orcid":"https://orcid.org/0000-0002-8778-8261"},"institutions":[{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hitomi Yuki","raw_affiliation_strings":["RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063060714","display_name":"Daisuke Takaya","orcid":"https://orcid.org/0000-0001-6020-8151"},"institutions":[{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daisuke Takaya","raw_affiliation_strings":["RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084974925","display_name":"Shunta Sasaki","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shunta Sasaki","raw_affiliation_strings":["RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101850776","display_name":"Akiko Tanaka","orcid":"https://orcid.org/0000-0002-2113-4919"},"institutions":[{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akiko Tanaka","raw_affiliation_strings":["RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054336320","display_name":"Teruki Honma","orcid":"https://orcid.org/0000-0003-3761-9504"},"institutions":[{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Teruki Honma","raw_affiliation_strings":["RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22\rSuehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"RIKEN Systems and Structural Biology Center, 1-7-22#R#Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210118579"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5054336320"],"corresponding_institution_ids":["https://openalex.org/I4210118579"],"apc_list":{"value":4500,"currency":"USD","value_usd":4500},"apc_paid":null,"fwci":2.2705,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.88542675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"52","issue":"4","first_page":"1015","last_page":"1026"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7289183139801025},{"id":"https://openalex.org/keywords/chembl","display_name":"chEMBL","score":0.7254496216773987},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6790481805801392},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6470689177513123},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.6339079141616821},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.600884735584259},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5916241407394409},{"id":"https://openalex.org/keywords/overlay","display_name":"Overlay","score":0.495047003030777},{"id":"https://openalex.org/keywords/similitude","display_name":"Similitude","score":0.4396919012069702},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4261571764945984},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4138743281364441},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.15581893920898438},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15308740735054016},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08147656917572021}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7289183139801025},{"id":"https://openalex.org/C63222358","wikidata":"https://www.wikidata.org/wiki/Q6120337","display_name":"chEMBL","level":3,"score":0.7254496216773987},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6790481805801392},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6470689177513123},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.6339079141616821},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.600884735584259},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5916241407394409},{"id":"https://openalex.org/C136085584","wikidata":"https://www.wikidata.org/wiki/Q910289","display_name":"Overlay","level":2,"score":0.495047003030777},{"id":"https://openalex.org/C143271835","wikidata":"https://www.wikidata.org/wiki/Q254515","display_name":"Similitude","level":2,"score":0.4396919012069702},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4261571764945984},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4138743281364441},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.15581893920898438},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15308740735054016},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08147656917572021},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci200562p","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci200562p","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:22424085","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22424085","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W605004440","https://openalex.org/W1565140361","https://openalex.org/W1570889609","https://openalex.org/W1592950931","https://openalex.org/W1968506227","https://openalex.org/W1971458166","https://openalex.org/W1972226553","https://openalex.org/W1972355793","https://openalex.org/W1972773608","https://openalex.org/W1973736595","https://openalex.org/W1979500125","https://openalex.org/W1979597166","https://openalex.org/W1980880280","https://openalex.org/W1985588649","https://openalex.org/W1988037271","https://openalex.org/W1988195734","https://openalex.org/W1989856356","https://openalex.org/W1990451437","https://openalex.org/W1991537916","https://openalex.org/W1995283995","https://openalex.org/W1997355076","https://openalex.org/W1999353322","https://openalex.org/W1999491936","https://openalex.org/W2002048459","https://openalex.org/W2002755329","https://openalex.org/W2005316727","https://openalex.org/W2007066406","https://openalex.org/W2009000921","https://openalex.org/W2009423060","https://openalex.org/W2009588798","https://openalex.org/W2013043758","https://openalex.org/W2014276094","https://openalex.org/W2014501798","https://openalex.org/W2027065525","https://openalex.org/W2028126678","https://openalex.org/W2030121478","https://openalex.org/W2035395192","https://openalex.org/W2039196793","https://openalex.org/W2039197391","https://openalex.org/W2058284855","https://openalex.org/W2060153789","https://openalex.org/W2067866176","https://openalex.org/W2072890254","https://openalex.org/W2077596285","https://openalex.org/W2078142106","https://openalex.org/W2078240823","https://openalex.org/W2085312881","https://openalex.org/W2088032561","https://openalex.org/W2090240212","https://openalex.org/W2092723276","https://openalex.org/W2099656143","https://openalex.org/W2116296021","https://openalex.org/W2119830208","https://openalex.org/W2125792789","https://openalex.org/W2128514839","https://openalex.org/W2130972451","https://openalex.org/W2133538529","https://openalex.org/W2141519753","https://openalex.org/W2144659448","https://openalex.org/W2156909104","https://openalex.org/W2166410137","https://openalex.org/W2176516200","https://openalex.org/W2210908728","https://openalex.org/W2911964244","https://openalex.org/W4248107770"],"related_works":["https://openalex.org/W4200070360","https://openalex.org/W2072444571","https://openalex.org/W2372745973","https://openalex.org/W3047084383","https://openalex.org/W3132064566","https://openalex.org/W2366015234","https://openalex.org/W2901750118","https://openalex.org/W4200262289","https://openalex.org/W2767339031","https://openalex.org/W2761967530"],"abstract_inverted_index":{"In":[0],"this":[1],"study,":[2],"machine":[3,8,45,169],"learning":[4,46,138,170],"using":[5,124],"support":[6,90],"vector":[7,91],"was":[9],"combined":[10],"with":[11,73,171],"three-dimensional":[12],"(3D)":[13],"molecular":[14,25],"shape":[15,26,71,98,111,180],"overlay,":[16],"to":[17,34,47,176],"improve":[18],"the":[19,23,42,67,79,86,94,105,109,125,134,142,148,160,165,172,178],"screening":[20],"efficiency.":[21],"Since":[22],"3D":[24,49,58,70,97,110,143,173,179],"overlay":[27],"does":[28],"not":[29,53],"use":[30],"fingerprints":[31],"or":[32],"descriptors":[33],"compare":[35],"two":[36],"compounds,":[37],"unlike":[38],"2D":[39],"similarity":[40,59,99,112,144,174],"methods,":[41],"application":[43],"of":[44,61,69,78,89,96,108,128,167,182],"a":[48,62],"shape-based":[50],"method":[51],"has":[52],"been":[54],"extensively":[55],"investigated.":[56],"The":[57,137,162],"profile":[60,175],"compound":[63],"is":[64,83],"defined":[65],"as":[66,85,118,159],"array":[68],"similarities":[72],"multiple":[74],"known":[75,126,155],"active":[76,184],"compounds":[77],"target":[80,130],"protein":[81],"and":[82,120],"used":[84],"explanatory":[87],"variable":[88],"machine.":[92],"As":[93],"measures":[95],"for":[100],"our":[101],"new":[102],"prediction":[103,106],"models,":[104],"performances":[107],"metrics":[113],"implemented":[114],"in":[115],"ROCS,":[116],"such":[117],"ShapeTanimoto":[119],"ScaledColor,":[121],"were":[122,157],"validated,":[123],"inhibitors":[127,156],"15":[129],"proteins":[131],"derived":[132],"from":[133],"ChEMBL":[135],"database.":[136],"models":[139],"based":[140],"on":[141],"profiles":[145],"stably":[146],"outperformed":[147],"original":[149],"ROCS":[150],"when":[151],"more":[152],"than":[153],"10":[154],"available":[158],"queries.":[161],"results":[163],"demonstrated":[164],"advantages":[166],"combining":[168],"process":[177],"information":[181],"plural":[183],"compounds.":[185]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
