{"id":"https://openalex.org/W2034354062","doi":"https://doi.org/10.1021/ci100384d","title":"Chemical Name to Structure: OPSIN, an Open Source Solution","display_name":"Chemical Name to Structure: OPSIN, an Open Source Solution","publication_year":2011,"publication_date":"2011-03-09","ids":{"openalex":"https://openalex.org/W2034354062","doi":"https://doi.org/10.1021/ci100384d","mag":"2034354062","pmid":"https://pubmed.ncbi.nlm.nih.gov/21384929"},"language":"en","primary_location":{"id":"doi:10.1021/ci100384d","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100384d","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021129795","display_name":"Daniel M. Lowe","orcid":null},"institutions":[{"id":"https://openalex.org/I1342131907","display_name":"Unilever (United Kingdom)","ror":"https://ror.org/05n8ah907","country_code":"GB","type":"company","lineage":["https://openalex.org/I1342131907"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Daniel M. Lowe","raw_affiliation_strings":["Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England","institution_ids":["https://openalex.org/I1342131907","https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056067513","display_name":"Peter Corbett","orcid":"https://orcid.org/0000-0002-3029-8325"},"institutions":[{"id":"https://openalex.org/I1342131907","display_name":"Unilever (United Kingdom)","ror":"https://ror.org/05n8ah907","country_code":"GB","type":"company","lineage":["https://openalex.org/I1342131907"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter T. Corbett","raw_affiliation_strings":["Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England","institution_ids":["https://openalex.org/I1342131907","https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041092827","display_name":"Peter Murray\u2010Rust","orcid":"https://orcid.org/0000-0003-3386-3972"},"institutions":[{"id":"https://openalex.org/I1342131907","display_name":"Unilever (United Kingdom)","ror":"https://ror.org/05n8ah907","country_code":"GB","type":"company","lineage":["https://openalex.org/I1342131907"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Peter Murray-Rust","raw_affiliation_strings":["Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England","institution_ids":["https://openalex.org/I1342131907","https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014283781","display_name":"Robert C. Glen","orcid":"https://orcid.org/0000-0003-1759-2914"},"institutions":[{"id":"https://openalex.org/I1342131907","display_name":"Unilever (United Kingdom)","ror":"https://ror.org/05n8ah907","country_code":"GB","type":"company","lineage":["https://openalex.org/I1342131907"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert C. Glen","raw_affiliation_strings":["Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unilever Centre for Molecular Science Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England","institution_ids":["https://openalex.org/I1342131907","https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5041092827"],"corresponding_institution_ids":["https://openalex.org/I1342131907","https://openalex.org/I241749"],"apc_list":null,"apc_paid":null,"fwci":2.6771,"has_fulltext":false,"cited_by_count":249,"citation_normalized_percentile":{"value":0.9055931,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"51","issue":"3","first_page":"739","last_page":"753"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.8037375211715698},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7277555465698242},{"id":"https://openalex.org/keywords/nomenclature","display_name":"Nomenclature","score":0.6033437848091125},{"id":"https://openalex.org/keywords/chemical-nomenclature","display_name":"Chemical nomenclature","score":0.5483624339103699},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5412063598632812},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5035497546195984},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.49416282773017883},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43282458186149597},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3834023177623749},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3382301926612854},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2547212839126587},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14438289403915405},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11032372713088989},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10531076788902283},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.10304570198059082},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.10091930627822876}],"concepts":[{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.8037375211715698},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7277555465698242},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.6033437848091125},{"id":"https://openalex.org/C125832229","wikidata":"https://www.wikidata.org/wiki/Q6503924","display_name":"Chemical nomenclature","level":2,"score":0.5483624339103699},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5412063598632812},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5035497546195984},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.49416282773017883},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43282458186149597},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3834023177623749},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3382301926612854},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2547212839126587},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14438289403915405},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11032372713088989},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10531076788902283},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.10304570198059082},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.10091930627822876},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1021/ci100384d","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100384d","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:21384929","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21384929","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W595758097","https://openalex.org/W1524134026","https://openalex.org/W1573821708","https://openalex.org/W1975147762","https://openalex.org/W1997461367","https://openalex.org/W1997523070","https://openalex.org/W2003887006","https://openalex.org/W2029213117","https://openalex.org/W2033377040","https://openalex.org/W2047600440","https://openalex.org/W2052639933","https://openalex.org/W2066173638","https://openalex.org/W2086300802","https://openalex.org/W2087728643","https://openalex.org/W2102110064","https://openalex.org/W2124426186","https://openalex.org/W2124479173","https://openalex.org/W2138689719","https://openalex.org/W2148797284","https://openalex.org/W2164839496","https://openalex.org/W2165825730","https://openalex.org/W2166216099","https://openalex.org/W2315533568","https://openalex.org/W4299823214"],"related_works":["https://openalex.org/W37902791","https://openalex.org/W4306291275","https://openalex.org/W4298847056","https://openalex.org/W4237911218","https://openalex.org/W2764713382","https://openalex.org/W4318710619","https://openalex.org/W2603795397","https://openalex.org/W4230503499","https://openalex.org/W2042369917","https://openalex.org/W4290641096"],"abstract_inverted_index":{"We":[0],"have":[1],"produced":[2],"an":[3,35,61],"open":[4,121],"source,":[5],"freely":[6],"available,":[7],"algorithm":[8],"(Open":[9],"Parser":[10],"for":[11,119],"Systematic":[12],"IUPAC":[13],"Nomenclature,":[14],"OPSIN)":[15],"that":[16,67],"interprets":[17],"the":[18,57,76,82,117],"majority":[19],"of":[20,124],"organic":[21,106],"chemical":[22,54,59,107,125],"nomenclature":[23],"in":[24,53,71],"a":[25,39,49,72],"fast":[26],"and":[27],"precise":[28],"manner.":[29],"This":[30,42,112],"has":[31,78],"been":[32,79],"achieved":[33],"using":[34,104],"approach":[36],"based":[37],"on":[38,70,87],"regular":[40],"grammar.":[41],"grammar":[43],"is":[44,65,68],"used":[45],"to":[46],"guide":[47],"tokenization,":[48],"potentially":[50],"difficult":[51],"problem":[52],"names.":[55],"From":[56],"parsed":[58],"name,":[60],"XML":[62],"parse":[63],"tree":[64],"constructed":[66],"operated":[69],"stepwise":[73],"manner":[74],"until":[75],"structure":[77],"reconstructed":[80],"from":[81,85],"name.":[83],"Results":[84],"OPSIN":[86],"various":[88],"computer":[89],"generated":[90],"name/structure":[91],"pair":[92],"sets":[93],"are":[94],"presented.":[95],"These":[96],"show":[97],"exceptionally":[98],"high":[99,109],"precision":[100],"(99.8%+)":[101],"and,":[102],"when":[103],"general":[105],"nomenclature,":[108],"recall":[110],"(98.7-99.2%).":[111],"software":[113],"can":[114],"serve":[115],"as":[116],"basis":[118],"future":[120],"source":[122],"developments":[123],"name":[126],"interpretation.":[127]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":33},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":33},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
