{"id":"https://openalex.org/W2087485814","doi":"https://doi.org/10.1021/ci100353e","title":"Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein\u2212Protein Docking","display_name":"Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein\u2212Protein Docking","publication_year":2011,"publication_date":"2011-01-07","ids":{"openalex":"https://openalex.org/W2087485814","doi":"https://doi.org/10.1021/ci100353e","mag":"2087485814","pmid":"https://pubmed.ncbi.nlm.nih.gov/21214199"},"language":"en","primary_location":{"id":"doi:10.1021/ci100353e","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100353e","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087135746","display_name":"Carles Pons","orcid":"https://orcid.org/0000-0002-9131-9089"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carles Pons","raw_affiliation_strings":["Life Sciences Department, Barcelona Supercomputing Center, National Institute of Bioinformatics, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Sciences Department, Barcelona Supercomputing Center, National Institute of Bioinformatics, Barcelona, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007774773","display_name":"David Talavera","orcid":"https://orcid.org/0000-0002-8820-3931"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Talavera","raw_affiliation_strings":["Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, U.K","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014970038","display_name":"Xavier de la Cruz","orcid":"https://orcid.org/0000-0002-9738-8472"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I4210166526","display_name":"Institut de Biologia Molecular de Barcelona","ror":"https://ror.org/05t8khn72","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210166526"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Xavier de la Cruz","raw_affiliation_strings":["CSIC-IBMB, Barcelona 08028, Spain, and ICREA, Barcelona 08018, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIC-IBMB, Barcelona 08028, Spain, and ICREA, Barcelona 08018, Spain","institution_ids":["https://openalex.org/I11932220","https://openalex.org/I4210166526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006399866","display_name":"Modesto Orozco","orcid":"https://orcid.org/0000-0002-8608-3278"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4210122345","display_name":"Institute for Research in Biomedicine","ror":"https://ror.org/01z1gye03","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210122345","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210166526","display_name":"Institut de Biologia Molecular de Barcelona","ror":"https://ror.org/05t8khn72","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210166526"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Modesto Orozco","raw_affiliation_strings":["CSIC-IBMB, Barcelona 08028, Spain, and ICREA, Barcelona 08018, Spain","Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, U.K","\u2020 Life Sciences Department, Barcelona Supercomputing Center and \u2021 Computational Bioinformatics, National Institute of Bioinformatics, Barcelona 08034, Spain","\u25cb Joint Research Program in Computational Biology, Institute of Research in Biomedicine and Barcelona Supercomputing Center and \u22a5 Departament de Bioqu\u00edmica, Universitat de Barcelona, Barcelona 08028, Spain","University of Barcelona"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIC-IBMB, Barcelona 08028, Spain, and ICREA, Barcelona 08018, Spain","institution_ids":["https://openalex.org/I11932220","https://openalex.org/I4210166526"]},{"raw_affiliation_string":"Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, U.K","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"\u2020 Life Sciences Department, Barcelona Supercomputing Center and \u2021 Computational Bioinformatics, National Institute of Bioinformatics, Barcelona 08034, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"raw_affiliation_string":"\u25cb Joint Research Program in Computational Biology, Institute of Research in Biomedicine and Barcelona Supercomputing Center and \u22a5 Departament de Bioqu\u00edmica, Universitat de Barcelona, Barcelona 08028, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I4210122345","https://openalex.org/I71999127","https://openalex.org/I9617848"]},{"raw_affiliation_string":"University of Barcelona","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021117369","display_name":"Juan Fern\u00e1ndez\u2010Recio","orcid":"https://orcid.org/0000-0002-3986-7686"},"institutions":[{"id":"https://openalex.org/I2799803557","display_name":"Barcelona Supercomputing Center","ror":"https://ror.org/05sd8tv96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Juan Fernandez-Recio","raw_affiliation_strings":["\u2020 Life Sciences Department, Barcelona Supercomputing Center and \u2021 Computational Bioinformatics, National Institute of Bioinformatics, Barcelona 08034, Spain","UNIVERSITY OF BARCELONA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u2020 Life Sciences Department, Barcelona Supercomputing Center and \u2021 Computational Bioinformatics, National Institute of Bioinformatics, Barcelona 08034, Spain","institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I9617848"]},{"raw_affiliation_string":"UNIVERSITY OF BARCELONA","institution_ids":["https://openalex.org/I71999127"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5021117369"],"corresponding_institution_ids":["https://openalex.org/I2799803557","https://openalex.org/I71999127","https://openalex.org/I9617848"],"apc_list":{"value":4500,"currency":"USD","value_usd":4500},"apc_paid":null,"fwci":3.8825,"has_fulltext":false,"cited_by_count":74,"citation_normalized_percentile":{"value":0.93072252,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"51","issue":"2","first_page":"370","last_page":"377"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8405748605728149},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5563228130340576},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5533268451690674},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4054064452648163},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3989800810813904},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2977229356765747},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2280483841896057},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14883911609649658},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10758477449417114}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8405748605728149},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5563228130340576},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5533268451690674},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4054064452648163},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3989800810813904},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2977229356765747},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2280483841896057},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14883911609649658},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10758477449417114},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1021/ci100353e","is_oa":false,"landing_page_url":"https://doi.org/10.1021/ci100353e","pdf_url":null,"source":{"id":"https://openalex.org/S167262187","display_name":"Journal of Chemical Information and Modeling","issn_l":"1549-9596","issn":["1549-9596","1549-960X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320006","host_organization_name":"American Chemical Society","host_organization_lineage":["https://openalex.org/P4310320006"],"host_organization_lineage_names":["American Chemical Society"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Chemical Information and Modeling","raw_type":"journal-article"},{"id":"pmid:21214199","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21214199","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of chemical information and modeling","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/517940f3-9fbf-4872-8821-340022ddeaf5","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/517940f3-9fbf-4872-8821-340022ddeaf5","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pons, C, Talavera, D, De La Cruz, X, Orozco, M & Fernandez-Recio, J 2011, 'Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): A new efficient potential for protein-protein docking', Journal of Chemical Information and Modeling, vol. 51, no. 2, pp. 370-377. https://doi.org/10.1021/ci100353e","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:digital.csic.es:10261/87688","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/87688","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Art\u00edculo"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.6600000262260437,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1589812083","https://openalex.org/W1965457996","https://openalex.org/W1971722050","https://openalex.org/W1974812871","https://openalex.org/W1983851480","https://openalex.org/W1985153601","https://openalex.org/W1985481261","https://openalex.org/W2000383223","https://openalex.org/W2014957977","https://openalex.org/W2025120281","https://openalex.org/W2048643046","https://openalex.org/W2054394841","https://openalex.org/W2056905437","https://openalex.org/W2074104861","https://openalex.org/W2075770210","https://openalex.org/W2090672363","https://openalex.org/W2098110345","https://openalex.org/W2099907934","https://openalex.org/W2111397525","https://openalex.org/W2111966042","https://openalex.org/W2114114762","https://openalex.org/W2119182595","https://openalex.org/W2121481614","https://openalex.org/W2126265982","https://openalex.org/W2131063642","https://openalex.org/W2136525667","https://openalex.org/W2153731681","https://openalex.org/W2153983456","https://openalex.org/W2157892451","https://openalex.org/W2157991822","https://openalex.org/W2160223767","https://openalex.org/W2160868144","https://openalex.org/W2162682281","https://openalex.org/W2167398093"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"A":[0],"detailed":[1],"and":[2,17,31,65,178],"complete":[3],"structural":[4],"knowledge":[5],"of":[6,11,20,36,81,91,107,133,139,150,170,173,192],"the":[7,12,34,40,52,56,137,147,163,171,190],"interactome":[8],"is":[9],"one":[10],"grand":[13],"challenges":[14],"in":[15,33,70,110,167],"Biology,":[16],"a":[18,159,174,185],"variety":[19],"computational":[21],"docking":[22,42,93,121,176,193],"approaches":[23],"have":[24,99],"been":[25],"developed":[26],"to":[27,79,118,180],"complement":[28],"experimental":[29],"efforts":[30],"help":[32],"characterization":[35],"protein-protein":[37,120],"interactions.":[38],"Among":[39],"different":[41],"scoring":[43,90,156],"methods,":[44],"those":[45],"based":[46,142],"on":[47,143],"physicochemical":[48],"considerations":[49],"can":[50],"give":[51],"maximum":[53],"accuracy":[54],"at":[55],"atomic":[57,82],"level,":[58],"but":[59],"they":[60],"are":[61,76],"usually":[62],"computationally":[63],"demanding":[64],"necessarily":[66],"noisy":[67],"when":[68],"implemented":[69],"rigid-body":[71,92],"approaches.":[72],"Coarser-grained":[73],"knowledge-based":[74],"potentials":[75,103],"less":[77],"sensitive":[78],"details":[80],"arrangements,":[83],"thus":[84],"providing":[85],"an":[86],"efficient":[87],"alternative":[88],"for":[89],"poses.":[94,122],"In":[95],"this":[96],"study,":[97],"we":[98],"extracted":[100],"new":[101,124,155],"statistical":[102],"from":[104],"intermolecular":[105,130,151],"pairs":[106],"exposed":[108,134],"residues":[109],"known":[111],"complex":[112],"structures,":[113],"which":[114],"were":[115],"then":[116],"used":[117],"score":[119],"The":[123],"method,":[125],"called":[126],"SIPPER":[127],"(scoring":[128],"by":[129,196],"pairwise":[131],"propensities":[132],"residues),":[135],"combines":[136],"value":[138],"residue":[140,152],"desolvation":[141],"solvent-exposed":[144],"area":[145],"with":[146],"propensity-based":[148],"contribution":[149],"pairs.":[153],"This":[154],"function":[157],"found":[158],"near-native":[160],"orientation":[161],"within":[162],"top":[164],"10":[165],"predictions":[166],"nearly":[168],"one-third":[169],"cases":[172],"standard":[175],"benchmark":[177],"proved":[179],"be":[181],"also":[182],"useful":[183],"as":[184],"filtering":[186],"step,":[187],"drastically":[188],"reducing":[189],"number":[191],"candidates":[194],"needed":[195],"energy-based":[197],"methods":[198],"like":[199],"pyDock.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
